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current user: public |
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Query: gi|33438754|ref|NP_878038.1| Putative protein of unknown function; identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching; Yal067w-ap (YAL067W-A) [Saccharomyces cerevisiae], from S.cerevisiae |
. 10 . 20 . 30 . 40 . 50 . 60 . 70 . | |||||||
# | Score | Template | Links and tools | %id | First | MPIIGVPRCLIKPFSVPVTFPFSVKKNIRILDLDPRTEAYCLSLNSVCFKRLPRRKYFHLLNSYNIKRVLGVVYC | Last |
1 | -8.050 | [S] COG4003 Uncharacterized protein conserved in archaea | ali follow.. | 28 | 5 | ..LIFLPRSITPRDYVPSKQISFLKLNIFLLSISLEKSS---------------KNNFLMLSSENYFRQFGVI.. | 60 |
2 | -6.800 | [S] KOG3188 Uncharacterized conserved protein | ali follow.. | 19 | 139 | ............PFPLTLKFKAMLQRGVDLVSLDS---AWVSSAS------------WYFLCMFGLRSIYTLV.. | 184 |
3 | -5.820 | [R] KOG0522 Ankyrin repeat protein | ali follow.. | 18 | 490 | .......KGLRPVLWLSERFPLQTKELLPLLDILANKVKAIRRLRELMTTKLP--------GTFPVKVAIPVIP. | 549 |
4 | -5.480 | [KB] KOG3265 Histone chaperone involved in gene silencing | ali follow.. | 13 | 10 | VQILDNPAMFVDKFKMEITFEVQVLDSALVGPIPEGRHKFVFDAEHPDISKIPVEDIVLLRCKYNDQEFINMGW. | 112 |
5 | -5.350 | [S] KOG2889 Predicted PRP38-like splicing factor | ali follow.. | 19 | 36 | ...........KEHCFALTAELVVDKGMDLRYIGG-TPFLCL-ALKMLQIQPDKDIVLEFIQQEEFKRALGAMY. | 106 |
6 | -5.280 | [L] KOG1532 GTPase XAB1, interacts with DNA repair protein XPA | ali follow.. | 15 | 46 | ..VVGMAGSGKTSFLHRLCHTFDSKSHGYVVNLDPAVMSLPFGANIDIRDTVKYKE---VMKQYNLGPNGGILTS | 116 |
7 | -5.270 | [U] KOG4697 Integral membrane protein involved in transport between the late Golgi and endosome | ali follow.. | 18 | 72 | .........VLNAFLASLALWCIVRRAKLCLDFSCTFHVLHLLICWWYNRSFPANASWWLLNTGTIMCIGGEFLC | 139 |
8 | -5.070 | [R] KOG1533 Predicted GTPase | ali follow.. | 14 | 38 | ..VIGAPGAGKSTFCAGLDIFSQTKRPFLTINLDPANDTMAYAPDVNITEMITVND---VMDRLGLGPNGALKYC | 108 |
9 | -5.040 | [K] KOG1534 Putative transcription factor FET5 | ali follow.. | 16 | 8 | ..VCGVASSGKSTFCGALSYMKSVGRSCHLVNLDPAAENFEWEPTVDIRDLISIDD---VMEELDYGPNGGLIYC | 78 |
10 | -4.740 | [S] COG3812 Uncharacterized protein conserved in bacteria | ali follow.. | 56 | 172 | ........................................................YFHLTTAYDILRHNGV... | 187 |
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9. Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018. Li W, Pio F, Pawlowski K, Godzik A. Saturated BLAST: an automated multiple intermediate sequence search used to detect distant homology. Bioinformatics. 2000 Dec;16(12):1105-10. |