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Query: gi|6319257|ref|NP_009340.1| Putative medium-chain alcohol dehydrogenase with similarity to BDH1; transcription induced by constitutively active PDR1 and PDR3; BDH2 is an essential gene; Bdh2p (YAL061W) [Saccharomyces cerevisiae], from S.cerevisiae

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MRALAYFGKGNIRFTNHLKEPHIVAPDELVIDIEWCGICGTDLHEYTDGPIFFPEDGHTHEISHNPLPQAMGHEMAGTVLEVGPGVKNLKVGDKVVVEPTGTCRDRYRWPLSPNVDKEWCAACKKGYYNICSYLGLCGAGVQSGGFAERVVMNESHCYKVPDFVPLDVAALIQPLAVCWHAIRVCEFKAGSTALIIGAGPIGLGTILALNAAGCKDIVVSEPAKVRRELAEKMGARVYDPTAHAAKESIDYLRSIADGGDGFDYTFDCSGLEVTLNAAIQCLTFRGTAVNLAMWGHHKIQFSPMDITLHERKYTGSMCYTHHDFEAVIEALEEGRIDIDRARHMITGRVNIEDGLDGAIMKLINEKESTIKIILTPNNHGELNREADNEKKEISELSSRKDQERLRESINEAKLRHTLast
1 -85.600[Q] KOG0024 Sorbitol dehydrogenase  ali follow..  29  9NLSLVVHGPGDLRLEN-YPIPE-PGPNEVLLRMHSVGICGSDVHYWEYGRIGNFI---------VKKPMVLGHEASGTVEKVGSSVKHLKPGDRVAIEPGAPREN--------------DEFCKMGRYNLSPSIFFCATPPDDGNLCRFYKHNAAFCYKLPDNVTFEEGALIEPLSVGIHACRRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLV---LQISKESPQEIARKVEGGCKPEVTIECTGAEASIQAGIYATRSGGTLVLVGL-GSEMTTVPLLHAAIREVDIKGVFRYC-NTWPVAISMLASKSVNV---KPLVTHRFPLEKA-LEAFETF--KKGLGLKIMLKCDPSDQN................................... 356
2 -76.800[ER] COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases  ali follow..  22  1MKAIVWQGVNKVGVET-VPDPTLLLPTDAIVKITSTAICGSDLHLLDGY------------IPSMETGDILGHEFMGEVVEVGSEVRKLKVGDRVVVPFNIACGV--------------CDPCKRGFFSACDNSNPNHRMAYAGGQAQYVRVPFAGPFKIESGLKDEQVLFLDIFPTGYQAAEQCNIVPGDVVAVFGAGPVGQFAARSAQMLGAAHVIVIDRVPERLAMAEAAGCQTI----NYEKEDVLLSLREATGGRGPDHVIDAVGMEAALRWAILSCAKGGTVSMPGVYGGLVDKMPIGAAFAKGLIFRMGQTHTHRHIPSLLGRIEAGQIDPS---FVITHRASLDQ-APELYKTFRDKQDCCIKVVLNP......................................... 390
3 -53.800[Q] KOG0023 Alcohol dehydrogenase, class V  ali follow..  19  13VFGWGARDKSGVLSPFHFSRRD-NGENDVTVKILFCGVCHTDLHTIKND------------WGYSYYPVVPGHEIVGIATKVGKNVTKFKEGDRVGVGVISSCQS--------------CESCDQDLENYCPQMSFTYNAKNYGGYSENIVVDQRFVLRFPENLPSDSGA---PLLCAYSPMKYYGTEAGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSTKAEEAINHLGADSFLVTTDPQKMK--------AAIGTMDYIIDTISAVHALYPLLGLLKVNGKLIALGL-PEKPLELPMFPLVLGRKMVGGSDVGGMKETQEMLDFCAKHNITA------DIELIKMDE-INTAMERLAKSDVRYRFVI............................................ 351
4 -53.500[C] COG1062 Zn-dependent alcohol dehydrogenases, class III  ali follow..  19  3SRAAVAFAPGKPLEIVEIDVAP-PKKGEVLIKVTHTGVCHTDAFTLSGD------------DPEGVFPVVLGHEGAGVVVEVGEGVTSVKPGDHVIPLYTAECGE--------------CEFCRSGKTNLCVAVRETQGKGL-STFSEYTVVAEVSLAKINPEANHEHVCLL--VTTGIGAVNTAKVQPGDSVAVFGLGAIGLAVVQGARQAKAGRIIAIDTNPKKFDLARRFGATDCINPND--YDKPIKDVLLDINKWGIDHTFECIGNVNVMRAALESAHRGGQSVIIGVAGSGQEISTRPFQLVTGRVWKGSAVKGRSQLPGMVEDAMKGDIDLE---PFVTHTMSLDE-INDAFDLM--HEGKSIRTVIR.......................................... 368
5 -52.000[R] COG1064 Zn-dependent alcohol dehydrogenases  ali follow..  22  4ARGYAATDASKPLAPFTFERRE-PRDDDVVIDIKYCGVCHSDIHQARDE------------WGNSTFPMVPGHEIVGIVRAVGSQVTRFKIGDRVGVGCFVSCTT--------------CAKRDLDLEQYLPGLVVTYNGVTQGGYSDHIVVKEGYVLSIPENLPLDAAA---PLLCAYSPLRHWKAGPGKKVAIVGLGGLGHMGVKLAHAMGA-EVTVLSQTLSKKEDGLKLGADHYYATKDPETFTKL--------AGSFDLIICTVAAEIDWNAYLNLLKVDGELVLVGI-PENPVPVHAFSLVPARRSISGSMIGSIKETQEMLDFCGEHGIVS------EIETIRMEQ-INEAYERVVRSDVRYRFVI............................................ 340
6 -51.700[Q] KOG0022 Alcohol dehydrogenase, class III  ali follow..  21  10CKAAVLWELKKPFSIEEVEVAP-PKAHEVRIKMVAAGICRSDEHVVSGN-------------LVTPLPVILGHEAAGIVESVGEGVTTVKPGDKVIPLFTPQCGK--------------CRICKNPESNYCLKNDLGNPRGT-STFSQYTVVDENAVAKIDAASPLEKVCLI--FSTGYGSAKVAKVTPGSTCAVFGLGGVGLSVVMGCKAAGAARIIAVDINKDKFAKAKELGATECINPQDY--KKPIQEVLKEMTDGGVDFSFEVIGRLDTMMASLLCHEACGTSVIVGVPPDSQNLSINPMLLLTGRTWKGAIFKSKESVPKLVADFMAKKFSLDA---LITNILPFEK-INEGFDLL--RSGKSIRTVL........................................... 373
7 -48.500[CR] KOG1198 Zinc-binding oxidoreductase  ali follow..  17  3LRYVVHDGFDQLKPEE-YEVPQKLNPGEVLVKLKAASLNYRDLIITKGLY------------LPLQLPVVPGSDGAGIIEKVGEDVEGFEKGDSVVCNF--------------------FTNYLDGTPTDFATHSALG-GTRDGCFQKYAVLPAHALVHAPKNLSFEEIATLPCAAVGLFGSKEHQVKPGNNVLVLGTGGVSTFALQFALAAGA-NVTVTSSSDEKLEFAKKLGATHTIN---KKTPQWASPALKMTNGVGYHHVIEVGG-EKTLPQSIACLAKDGMISMIGFVASEGTTPNIGQILNRNANIRGIFVGSVSMFRDMVACIEAKDI-----HPVVDKVFPFDQLKE-AYEYQWSQAH---KVVLKID........................................ 346
8 -43.000[CR] KOG1197 Predicted quinone oxidoreductase  ali follow..  17  2VKGIRVYGGPEVLKWEDVEVGE-PKEGEIRVKNKAIGLNFIDVYFRKG------------VYKPASMPFTPGMEAVGEVVAVGSGLTGRMIGDLVAY-----------------------------------------AGNPMGAYAEEQILPADKVVPVPSSIDPIVAAMLKGMTAQFLLRRCFKVEPGHTILVHAAGGVGSLLCQWANALGA-TVIGTVSTNEKAAQAKEDGCHHV---IMYKNEDFVSRVNDITSGKGVNVVYDSVG-KDTFKGSLACLKSRGYMVSFGQSSGSPDPIPLSDLAPKSLFLTRPSMMHLECAGEVFANVTSGIL-----KARVNHKYPLSRVADA--HADLENRITSGSVVLLP......................................... 324
9 -40.900[KC] KOG0025 Zn2+-binding dehydrogenase (nuclear receptor binding factor-1)  ali follow..  16  17TRQLVYENPPEAIQLKTVTIADKPSADQVLVQWIAAPINPADLNQIQG--------------VKPALPAVGGNEGFGKVISVGSNVSSIKVGDHV-----------------------------------------IPDRSGLGTWRELGLHQENDLFPIDNTLSMEYAATVNPPTAYRMLKDFIDLKKGDTVAQNGASAVGKHVIQICRILGIKTVNVVDNLEELVKELKDLGADEVI--------TQEELYSRKKKFPGVKLALNCVGGR-SSLFLASLLDHGGCMVTYGGMSKQPVDCPTGPLIFKDISLRGFWEKRHEMYQELAGWMKSGEI-----KKQEIVKNRLED-HAKALDTALSKFDKKQFFVLE.......................................... 344
10 -37.400[CR] COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductases  ali follow..  13  1MQALLLQDGKTLASVQTLDESR-LPEGDVTVDVHWSSLNYKDALAITGKGKIIR-----------NFPMIPGIDFAGTVRTSE--DPRFHAGQEVLLTGW---------------------------------------ENHWGGLAEQARVKGDWLVAMPQGLDARKAMIIGTAGFTAMLCDAGVRPQDGEIVVTGAGGVGSTAVALLHKLGY-QVVAVSGRESTHEYLKSLGASRI---LPRDEFAESRPL----EKQVWAGAIDTVG-DKVLAKVLAQMNYGGCVAACGLAGGFTLPTTVMPFILRNVRLQGVDSVMTPPERRAQAWQRLVADLPESFYTQAAKEISLSE-APNFAEAIINNQIQG-RTLVKVN........................................ 324
11 -15.300[R] KOG1196 Predicted NAD-dependent oxidoreductase  ali follow..  14  28..............STTIDLRVLKGSMTALVKNLYLSC---------DPYMRNRMRKPDPLSPATAQSFTPGKPISGFGVSIDSGHSDYEEGDLIW------------------------------------------------GWEEYSVITPIPNLHFKIHLSYYTGLLGMPGMTAYVGFEICTPKKGDTVFVSAAGAVGQLVGQFAKLMGCYVVGSAGSKEKVDLLKNKFGFDD---AFNYKEEHNLIGALKRCFPEGIDIYFENVGGK-MLDAVILNMRPHGRIAACGMISQYNLK-GLSLITYKRIRIEGFNCFDYFHLEFVVPYIKEGKI---KYVEDVADGL---ESAPAALVGLFHGKNVG-KQLVVVSPS...................................... 346
12 -15.200[R] COG2130 Putative NADP-dependent oxidoreductases  ali follow..  16  33.......................LQDGQVLVRNHFLSL--------------PYMRGRMNDSKSYAQPQPLGEVMIGGTVGEASRNPAYAVGDNVV-----------------------------------------------FGWQEVGISDGRGMQKVDTRLSAYLGSVGMPGVTAWYGLRIMHPKPGQTVAVSAAGAVGSVVGQLAKLKGCRAVGFAGGKDKCDYVVNELGFDACIDYKAAKDPKELYAMLKEATPDGIDAYFENVGGD-ILDAVLRRMNPFGRIAMCGMIAGPLPLQNPQLILVSRLTVEGFIVSEHMDLRELGGSVAQGKL---KFRESVAQGL---ASAPEAFIGLLKGKNFG-KQLVK.......................................... 334
13 -10.700[J] KOG2915 tRNA(1-methyladenosine) methyltransferase, subunit GCD14  ali follow..  12  151........................................................................................FQAGELILAETG---EGETKFKKLFRLNNFGLLNSNWG---AVPFGKIVGKFRSSFGKQYMLRRPALEDYVVL-----RGTAITFPKDINM-ILSMMDINPGDTVLEAGSGS-GGMSLFLSKAVGQGRVISFEVRKDHHDLAKKWRDSWKLSHVEEWPDNVDFIHKDISGATEFDVALDMLNPHVTLPVFYPHLKHGGVCA--------------------------VYVVNITQVIELLDGIRTCELALSCEKEVIVRDWLVCLAKQKNGILAQKVESKINTDVQLDSQEKIGVKGELFQEDDHEESHSDFPYGSFPYVARPVHWQHT 463
14 -9.580[R] COG4106 Trans-aconitate methyltransferase  ali follow..  11  17...............................................................................................................................................................................RPARDLLAQVPLERVLNGYDLGCGP-GNSTELLTDRYGVNVITGIDSDDDMLEKAADRLPNTNFGKAD---------LATWKPAQKADLLYAVPDHLAVLSQLMDQLESGGVLAVQMPDNLQEPTHIAMHETADGGPWKDAFSKPLPPPSDYFNALSPKSSRVDVWHTVYNHPMKDADSIVEWVKGT....................................................... 205
15 -9.530[J] KOG3420 Predicted RNA methylase  ali follow..  15  19.................................................................................................................................................................PKIKLEQYATSSELAVMMEMIDETIGFEGKKLIDIGCG-CGMLMTTAATMYELETVLGVDIDDEALKICSRLETAEVQDRCELLQADILDPESDLPRGT-FDVAVNAGIDMQFVQIGLQMVRPGGSVFSL.............................................................................................................................. 157
16 -9.490[R] COG3897 Predicted methyltransferase  ali follow..  17  42....................................................................................................................................................................ELEEIGLPPPQGLARYILDHPESVCGKRVLDFASG-SGLVAIAAAKA-GAAKVLAADIDPWTETAIRL-NAALNGVDIGFTGLDLVGKPVDADVLLAGDVFYDRA-FADLLVPWFVELTEKGMIVLVGDPGRAYLP..................................................................................................................... 182
17 -9.250[J] COG1889 Fibrillarin-like rRNA methylase  ali follow..  11  69...................................................................................................................................................................................NGLKLVPIKEGTHILYLGAAS-GTTPSHISDIVGNGLIYSVEFSPRVFREFMEKLVDQGRRNVVPILGDARFPYQYAHYVKGVDVVYQPAQAKILADNADYFLKPGGHVMLVIKAMSIDVTAPATETFKQEINTLKERGFD................................................................................................. 213
18 -9.200[H] COG0373 Glutamyl-tRNA reductase  ali follow..  11  1MSLLAIHNTASVELREKVAFGPEKLSLALVKGGVILSTCNTEIYCDVRSASKNKVIEWLSQFHQVSLDELKPSAAIRHLMRVACGLDSLVLGEPQIL----------------------------GQVK-----QAYAEARENHAVNPATEKLFQKAFSVAKRVRTETEIGGSAVSVAYAACTLAKHIFESTVLLVGAGETIELVAKHLAGHHCKRMIVANRTRERLSLAQQFGADVIA-------NEIPDYLAQ------ADIVISSTASPLPI-ESALKARRHQPMLLVDIAVPRDIEPQVG-------KLNDAYLYSVDDLQSIVD-IEQRKVEAIQAEAIV------SEESATFMSWMRSLQAVDSIRDYRKQANEAREELLNKSLQALAAGGDPEKLLIELSNKLTNKLIHT 389
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Zhang B, Jaroszewski L, Rychlewski L, Godzik A. Similarities and differences between nonhomologous proteins with similar folds: evaluation of threading strategies. Fold Des. 1997;2(5):307-17.