current user: public |
|
Query: gi|6319263|ref|NP_009346.1| Putative peroxisomal membrane protein required for import of peroxisomal proteins, functionally complements a Pichia pastoris pex22 mutation; Pex22p (YAL055W) [Saccharomyces cerevisiae], from S.cerevisiae |
. 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 . 140 . 150 . 160 . 170 . 180 | |||||||
# | Score | Template | Links and tools | %id | First | MPPPSRSRINKTRTLGIVGTAIAVLVTSYYIYQKVTSAKEDNGARPPEGDSVKENKKARKSKCIIMSKSIQGLPIKWEEYAADEVVLLVPTSHTDGSMKQAIGDAFRKTKNEHKIIYCDSMDGLWSCVRRLGKFQCILNSRDFTSSGGSDAAVVPEDIGRFVKFVVDSDVEDVLIDTLCN | Last |
1 | -6.650 | [S] COG5353 Uncharacterized protein conserved in bacteria | ali follow.. | 8 | 2 | ...KKRKMTRHSQIIIGILVIILAIYLSISLFFWKSLNPYHSVRAQAIDIATEKTDLVKATGFDIAATDTVTYSIVGLNKANQEIGILIPKKSGKIKEVKLSQGVSPASLTTKDTKSVVKGKPAWEVNNSNGFKVYDFESGKE..................................... | 145 |
2 | -6.310 | [G] KOG1413 N-acetylglucosaminyltransferase I | ali follow.. | 10 | 1 | MKRVLRRSASKHASTLFKIICILVLCS-LQKNTAIHAPRSNSREDEDDILIPADNKDQQFVAAVLVLRNHLSQILAQRPSHFQYHIIVSQDGNKTAVTQVAQKKTEIKKRNNYPAISAHYKWALDKAFKGFRYDHVIVTEDDL---------DIGNDFFSYFRWGKQVLNSDDTIWCVSA | 203 |
3 | -6.010 | [S] COG1799 Uncharacterized protein conserved in bacteria | ali follow.. | 10 | 56 | ...................................ENNITRLHARQQELANQSQRATDKVIIDVRYPRKYEDATEIVDLLAGNESILI--------------DFQYMTEVQARRCL--DYLDGACHVLKKVASTMYLLTPVNVIVNVEDIRLPDEDQQGEF................... | 169 |
4 | -5.840 | [S] COG3766 Predicted membrane protein | ali follow.. | 14 | 13 | ..............LSYFSIGLVCFAIFSTIYTRLTPHEEVELIKAGNISAVVAFLGALIGFSLPLASAAAHSVSLPDYVIWAAIGLLV-------QVLAFYIAKLTMTDLHLKITEGNVAAGLWSGGIAVVIGTL............................................ | 127 |
5 | -5.800 | [M] COG1794 Aspartate racemase | ali follow.. | 10 | 77 | .................AEVIVVCTNTMHKVADDIEAACGLPLLHIADATAVQIKQQGIDKIGLLGTRYTMEQGFYRGRLTEKHGIEVITPDDTDREAVNRIIYEELCLGI----ISETSRDAYRRVIKKLEAQGIIFGCTEITLLVNAQDASVP......................... | 213 |
6 | -5.390 | [M] COG4520 Surface antigen | ali follow.. | 14 | 45 | ..................................................DRGDQTKALEAEYKALETAPVGTPVIWTGDDVKGQVVANAPYQVGNQNCRQYSHTLTGRDTRVRGAACRNDDGSWSPL.................................................... | 124 |
7 | -5.200 | [T] KOG1323 Serine/threonine phosphatase | ali follow.. | 10 | 385 | ..............................................................TIGVTRGLGDHDLK-DSNIYIKPFLSSAPEVRIYDL-----SKYDHGSDDVLILATD---GLWDVLSN--EEVAEAITQFLPNCDPDDPHRYTLAAQDLVMRARGVLKD......... | 484 |
8 | -5.010 | [S] KOG4587 Predicted membrane protein | ali follow.. | 5 | 505 | ....................SALVGVIAILFYRGIPNIRQQLNVKGEYSNPDQEMQHNTKQDAVFAGTMPVMANV----KLTTLRPIVNHPHYEHVGIRERTLK--------YSMFSKKPIAEVHKIMKEMGVNYFVFQLMNCSNDERRPECVYRGMWD..................... | 637 |
9 | -4.910 | [R] COG4028 Predicted P-loop ATPase/GTPase | ali follow.. | 9 | 107 | .......................................................SYIKGLHDFVVIESYSNYAAPTFKSLDVDVVIAVAPG-------------------KVALFKGEDYRKATSLYFNMKSPWLITTEDILPLLKPIKIVEFGEGVFDLVAQVVEASSS......... | 207 |
10 | -4.870 | [J] KOG3073 Protein required for 18S rRNA maturation and 40S ribosome biogenesis | ali follow.. | 12 | 1 | ..................................MSHEYDTVAPPNAKRMKTDNQLEDKKILYVVLEGCSLET-------VGGEYAILSSDKHANFLRKQKKDPADYRPDILHQCL---NRAGKLRVFFRTSKNVLVDVSPQC---------RIPRTFDRFCGLMVQLLHKLSI...... | 131 |
FFAS is supported by the NIH grant R01-GM087218-01
|
Selected papers from Godzik Lab Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9. Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018. Pawlowski K, Rychlewski L, Zhang B, Godzik A. Fold predictions for bacterial genomes. J Struct Biol. 2001 May-Jun;134(2-3):219-31. Review. |