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Query: gi|16758994|ref|NP_454611.1| thr operon leader peptide (STY0001) [Salmonella enterica subsp. enterica serovar Typhi str. CT18], from S.typhi

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20
# Score Template Links and tools%idFirst MNRISTTTITTITITTGNGAGLast
1 -2.280[T] KOG2417 Predicted G-protein coupled receptor  ali follow..  30  151ISRVGVVGVTIMAILSGFGA. 170
2 -1.890[N] COG5567 Predicted small periplasmic lipoprotein  ali follow..  23  1MKNVFKTLAVLLTLFSLTGCG 21
3 -1.790[J] COG0858 Ribosome-binding factor A  ali follow..  23  31..RVGMATVSGIELS...... 43
4 -1.770[S] COG4185 Uncharacterized protein conserved in bacteria  ali follow..  28  3IVRLKKLEQPVFLIVAGNGSG 24
5 -1.730[I] COG0825 Acetyl-CoA carboxylase alpha subunit  ali follow..  19  185LREMSRLNVPVICTVIGEGGS 205
6 -1.690[R] KOG4431 Uncharacterized protein, induced by hypoxia  ali follow..  20  63..RVAAQGTVVGCLTAG.... 77
7 -1.670[V] KOG4788 Members of chemokine-like factor super family and related proteins  ali follow..  56  4.....TVTRTTITTTTTSSSG 19
8 -1.660[S] KOG4618 Uncharacterized conserved protein  ali follow..  43  8..RRQTSSLSTITMTNDN... 27
9 -1.540[N] COG1582 Uncharacterized protein, possibly involved in motility  ali follow..  33  19IEQIEAFPDTTITLINGK... 36
10 -1.530[L] COG1332 Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily)  ali follow..  18  2..KCKIELLSPLHIGNGN... 17

FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 6 2 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Tkacz A, Godzik A., Rychlewski L. A support vector machine approach to the identification of phosphorylation sites. Cell Mol Biol Lett. 2005;10(1):73-89.