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Query: gi|16759007|ref|NP_454624.1| putative regulatory protein (STY0014) [Salmonella enterica subsp. enterica serovar Typhi str. CT18], from S.typhi

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MGSKGANKSFDYNLIKILDAVILSGNAAMAAKKLGITPAAVSLALKRLQSYYPEELFSRGKGGLIPTAKAVDIHQNFSQVMKLVDDTFLCNSKKDEAFQITLLGSDIVESYYLSQLYNSDIFDRILINHFSVRNMSREHISELLFTAQGDLLISAEPLLESGIENQIIDSFKSFVCICSSKHMLSTLSQLSLHHFYSSRHALYQPGMGASVIYHDSELFKDELYYTGRRIVGYRSDSLNGLMSMIERTSLIALMPLKLALFYKNHRKYDIKFIQPPPELAFKSVQVYASWKKNSRNISTINEMVSMLQTLSSFRRLast
1 -30.800[K] COG0583 Transcriptional regulator  ali follow..  13  2......VAPLDWDKLRIFHAAAEAGSFTHAAQTLHLSQSAISRQVSALEQDVGVPLFHRHARGLILTEQGETLYRTAHDVLMKLENVKLAESREKPSGRLRVTTTVGLGSGWLIERIQEFVELYPDVQ----LQLILDNEELDLTMRHADCAVRLRQPQQPDLIQRRLFIVHMHVY-ASAGYVSKYGKLNSIDEIDQHRIVTFGEPAPSYLTGLN--LETAGRPDGSARIPALQVNNLLSVRRAVQRGVGIAVLPDYMADKESGLVQL------LPELEEIPSFDTFFCYPEALKNSAKLHAFRDFLFSKARN.. 298
2 -10.600[R] COG2005 N-terminal domain of molybdenum-binding protein  ali follow..  15  17.........ADPRRISLLKHIALSGSISQGAKDAGISYKSAWDAINDMNQLSEHMLVERAGGGAVLTRYGQRLIQLYDLLGQIQQKAFDVLSD-----DDALPLDSLLAAISRFSLQTSARNQWFGTITARDRDLVQQHVDVLLADGKTRLK---VALTAQSGERLGLEEGKEVLILLKAPWVGITRDARAADNQLSGTISHIERGAEQC-------------------EVLMALPDGQTLCATIPTSDAATLKEGDDVIAWFNADRVIIATL.......................................... 261
3 -8.790[K] COG1846 Transcriptional regulators  ali follow..  19  39........ALTPSEIHTIDAIGTDEGLLMKAERLGVTKGAVSQLVDRLEA---KALVRRTAH-VVLTDKGREAYRAHADMHAAFYEELQQSFTKEEIAIFEQCVSKLRDIL............................................................................................................................................................................................................ 147
4 -8.080[K] COG3355 Predicted transcriptional regulator  ali follow..  18  24........GLSKSDVEVLHILLQNGKMTTDSQKLNVTKASISKALNNLLDK-AEKEERKGRPNYIYWVEKERLYRKLEADLEKLAGTVKEALQKHTALEIVI..................................................................................................................................................................................................................... 127
5 -8.060[S] COG3388 Uncharacterized protein conserved in archaea  ali follow..  12  1MKEYSIFREIINDMDTVINVLLREQPIGIISQETGIPEHKIRYSLRILEQ---ENIISPSREGAILTPDFIEHKEQIIADAEKVLEEATK................................................................................................................................................................................................................................. 95
6 -8.040[S] COG3877 Uncharacterized protein conserved in bacteria  ali follow..  17  37.....FLDKDELEFVILF--FRARGNLKEIERYTGQGYFALRGKLEKILEKMNEDLFKQVKEGKIGVEEALEILKKRKK............................................................................................................................................................................................................................................ 121
7 -7.710[KH] COG1339 Transcriptional regulator of a riboflavin/FAD biosynthetic operon  ali follow..  11  1.........MKMKTLFLLIKLAKMGTMRELSRELDVSPQTVLRWLEELKE---QGYIHKRESRVELTEKGINLLEKLYEEISTALYS.................................................................................................................................................................................................................................... 87
8 -7.600[K] COG5625 Predicted transcription regulator containing HTH domain  ali follow..  12  13LLKAIGLKKNEIRIYRLLVEKRRGMRIREIQRELGISERSVRTHVLNLYRR----LLKRELVQVSPLEILQKIKEHLMKSIEELERDLKN................................................................................................................................................................................................................................. 109
9 -7.570[R] COG2522 Predicted transcriptional regulator  ali follow..  15  23...............SIAKILVEEYKMSKVAKMLGATPTAVSYYISGKRG--------------EKFVDRIIRDEEIYSIVREAASLLVEAHE.............................................................................................................................................................................................................................. 88
10 -7.490[K] COG5631 Predicted transcription regulator, contains HTH domain (MarR family)  ali follow..  13  80.....GLSPIEILILHSIRHRDREKKLADICLALDIETHIATYAIRKLEKA----LLTTGKAAVKITAKGAEACAHYAQIRERLLVDSTANARPSEETLSELAA-------LLRFMSGAFNQATRSAITL......................................................................................................................................................................................... 199
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Rychlewski L, Godzik A. Improving the quality of twilight-zone alignments. Protein Sci. 2000 Aug;9(8):1487-96.