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Query: gi|16759008|ref|NP_454625.1| hypothetical protein (STY0015) [Salmonella enterica subsp. enterica serovar Typhi str. CT18], from S.typhi

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110
# Score Template Links and tools%idFirst MSIPNHVSTTEVVLLELEILLTIISIGAWGGFVSYLLRKDKTEYNSSHESIKYCLTQIVISCFTSFLLSAIAIEKECSFNIVLLAAGLGGVFASPILKILGRRIKKIIGGNNSDLast
1 -10.100[D] COG0239 Integral membrane protein possibly involved in chromosome condensation  ali follow..  13  1.................MYFLYVGIFGALGGMCRYAMNL-----GGGDFPSATLAVNLIGCFLLAFIMPFLAEKSRISLVLLNGIG--TGFIGA.................... 72
2 -8.430[U] KOG2887 Membrane protein involved in ER to Golgi transport  ali follow..  13  117LPVMVLMPQKFAICFTLGCGFIIGSFFALRGPQNQLAHMSSAERLPLTLGFIATMVGTIYVSMVSYILSVIFSALQVIALAYYCISYFPG--GSSGMKFLSSTLTSSVFR.... 226
3 -7.970[U] COG5102 Membrane protein involved in ER to Golgi transport  ali follow..  15  89FPVLVLKPRKFVLLWTMGSLLAVLGFAIVQGFVAHFRQLTTMERLPITLSYFVTLLATIIATIKSTILSIVFGVLHILSFVAYLIAFFPF--GTRTVSLGTRMASRSLSN.... 198
4 -7.890[S] COG5346 Predicted membrane protein  ali follow..  9  60..............................NGADRIMAMAEKEQAVRHETIRQDQTFNRRGQLYGFISAILILLFAVFLVWSGYPATAASLAGGTVFALAGAFVIGRSRDQGKN 143
5 -7.770[S] KOG4452 Predicted membrane protein  ali follow..  16  1MELEAMSRYTSPVNPAVFPHLTVVLLAIGMFFTAWFFVYEVTSTKYTRDIYKELLISLVASLFMGFGVLFLLLWVGI..................................... 77
6 -7.500[S] COG2261 Predicted membrane protein  ali follow..  10  1...................................................MGIIAWIIFGLIAGIIAKLIMPGRDGGGFFLTCILGIVGVVGGWLATMF.............. 50
7 -7.300[P] KOG3788 Predicted divalent cation transporter  ali follow..  12  274................WLNVIVIVLFLLLLPFWIKIANENEGTQETLYNGWTPVIMSMLISSAGGFILETAVRRYHSLSTYGPVLNGVGGNLAAVQASRLSTYF.......... 361
8 -7.290[G] KOG2533 Permease of the major facilitator superfamily  ali follow..  11  193...................FLGVAESGLWPGLAYYMSRWYRGKHLGKRIGWY-YTAAQIAAAAVSLVSAGFQK-----------MDGARGLYGYQWMFLIWGVVAIAQA..... 270
9 -7.270[T] KOG2290 Rhomboid family proteins  ali follow..  15  654...................YRLWLSLFLHAGILHCLVSI--LRDLEKLAGWHRIAIIYLLSGVTGNLASAIFLPYRAE---VGPAGSQFGILACLFVELFQS............ 737
10 -6.930[V] COG4767 Glycopeptide antibiotics resistance protein  ali follow..  12  101......................FIMFVPLGILLPLCFPKLTWKSVFAISFIATVGIE-FAQLLQDLIYQAPFKFVDIDDVILNFSGGIFGYIVYVIIRPLLRKMNLCPIVEKNS 191
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Rychlewski L, Zhang B, Godzik A. Fold prediction by a hierarchy of sequence, threading, and modeling methods. Protein Sci. 1998 Jun;7(6):1431-40.