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Query: gi|16759009|ref|NP_454626.1| hypothetical protein (STY0016) [Salmonella enterica subsp. enterica serovar Typhi str. CT18], from S.typhi

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MNPIIDGIIALEGGYVFNPKDKGGATHWGITEATARAHGYAGDMRDLTHAEAYAILEEDYWIKPGFDVISTLSWPVSFELCDAAVNIGDYHPSAWLQRWLNVFNHEGKRYPDVHVDGNIGPRTLAALEHYLAWRGQEGEAVLVKALNCSQGMYYLNVAEKNHNNEQFIYGWIKNRVTLast
1 -74.900[R] COG3926 Putative secretion activating protein  ali follow..  25  6ERESLARVLAHEGGYSNHPNDPGGPTMKGVTQRVYDGFRATRSVKSITTAELNEIYDRQYWDAVQGDA---LPAGVDYVVFDGAVNSGPGRSIMWLQQALRPAY-------TGRIDGVLGMGTLAALKAD------KNNDALIDRICSARMAFLKHL----STFGTFGRGWTARVAE 167
2 -14.200[M] COG3409 Putative peptidoglycan-binding domain-containing protein  ali follow..  15  86................................................................TGEPVADIQRRLGIYD-DGIFGSATYSAVVDFQRRIDREFHRNGYSDPLALDGIVGAQTWYYLK................................................. 148
3 -6.810[S] COG3784 Uncharacterized protein conserved in bacteria  ali follow..  16  7...........................................................................................LIAVWAIGLMSDSAMALTLNEARSQGRVGETLNGYLVAL---QTDAETQALVKDINEARNHSYQQLAKQNNVVARAKSGWLRK... 108
4 -6.500[M] COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains)  ali follow..  16  92.PQLITAIIAIESGGNPNAVSKSNA--IGL-------------MQLKASTSGRDVYRR----------MGWSGEPTTSELKNPERNMGAAYLNILETGPLAGIEDPKVLQYALVVSYANGAGALLRTFSSDRKKAISKINDL------DADEFLDHVARNHPAPQA--PRYIYKLEQ 236
5 -6.220[V] COG3023 Negative regulator of beta-lactamase expression  ali follow..  11  68.EVSAHYVVHEDGRVVQMVSEKAGKSFWGIEIVNPGVLENYPPFHDAQIEAVIRLCQKRHWKRLHDAGIGHYVEPTPICGGRFLARGEQGQPVEALQSMLALYGY------EIAITGIFDEATEIVIKAFQRHFRPQNVDGVADV---STIDTLYRLNFSLQNVTA........... 268
6 -6.040[R] COG3772 Phage-related lysozyme (muraminidase)  ali follow..  10  25.EILDQFLDEKEGNHTTAYRDGAGIWTICRGATRGDGKPVIPG-MKLSKEKCDRVNAIER-DKALAWVEKNIRVPLTEPQKAGSVQHWPR....................................................................................... 116
7 -5.460[C] KOG3466 NADH:ubiquinone oxidoreductase, NDUFB9/B22 subunit  ali follow..  12................................................KRQVCSLYKRALWYDRR--NVYRYRAVQLRARFDENRSKDLGEGIRLLACGQRELFETRHFQPRNFANSAGGCA----------EREVIPPDWVLDYWHPLEKAQYPEYFAKREQRKKFVTWWEKQ... 132
8 -5.440[HR] KOG2303 Predicted NAD synthase, contains CN hydrolase domain  ali follow..  351.....GFLLPLSGGVCEAVRSGNEEVLADVRTIVNQISYTPQDPRDLCGRILTTCYMSKNSSQETCTRARELAQQIGSHHISLNIDPAVKAVMGIFSLVTGKSPLFAAHGGSSREN---------ALQNVQARIRMVLAYLFAQLSLWSRGVHGGLLVLGSANVDESLLGYLT.... 527
9 -5.350[O] COG2844 UTP:GlnB (protein PII) uridylyltransferase  ali follow..  13  86.....DLALVAVGGYGRGELHPLSDV----------------DLLILSRKKLPD-------------DQAQKVGELLTLLWDVKLEVG--HSVRTLEECMLEGLSDLTVATNLIESRLLGDVALLELQKHIFSEGFWPSDKFYAAKVEEQNQRHQRYHGTEPDIKSSPGGWVARR.. 238
10 -5.320[M] COG2230 Cyclopropane fatty acid synthase and related methyltransferases  ali follow..  15  201............GGMGLYLARHLKANVTGVTLSEEQHAIANQRARDEGLADRAKFELTDYRNNDKFDRL------VSVGMFE---HVGVGHFAEYFQHVARLMKPDGVFLLHAIGRSDGPGATNPFIRKYIFPGGYIPALSEVLPHIEKAGLYVTDIEILRLHYAETLKAWREAFLA 357

FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 6 2 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Tkacz A, Godzik A., Rychlewski L. A support vector machine approach to the identification of phosphorylation sites. Cell Mol Biol Lett. 2005;10(1):73-89.