current user: public |
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Query: gi|16759010|ref|NP_454627.1| hypothetical protein (STY0017) [Salmonella enterica subsp. enterica serovar Typhi str. CT18], from S.typhi |
. 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 . 140 . | |||||||
# | Score | Template | Links and tools | %id | First | MKTYIINSNCIYNEGKYELRTVSNSQVIKMTAMRAKCLSFIIENAHLEIIERQKITTALWGSRSHYVNDANLTQILYLIRRDLKALGINDLFITIPRQGLKVNSDIAIIATDSETKGRKKQIVRQTIAALTTVFSVTLGSLMYLHIH | Last |
1 | -42.800 | [K] COG3710 DNA-binding winged-HTH domains | ali follow.. | 15 | 18 | .TKFILAEKFTFDPLSNTLIDKESEEIIRLGSNESRILWLLAQRPN-EVISRNDLHDFVWREQGFEVDDSSLTQAISTLRKMLKDSTKPQYVKTVPKRGYQLIARVETVEEEMARESEAAHDISQPESVNEYAESSSVPS....... | 157 |
2 | -19.500 | [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain | ali follow.. | 15 | 140 | .......GEWTFDVQRRALS--RNGEPVKLTKAEYELLVALSSYPN-QVLSRERILNMISH-RVDAPNDRTIDVLIRRMRAKMEDPKNPQIFVTVHGEGYMFAGD.......................................... | 234 |
3 | -17.000 | [T] COG3629 DNA-binding transcriptional activator of the SARP family | ali follow.. | 10 | 7 | ................GPLELNLRGTKLPLGTPKQRAVLAMLLLSRNQVVAADALVQAIWEKSPPARARRTVHTYICNLRRTLSDAGVDNILVSEPP-GYRL............................................. | 93 |
4 | -15.300 | [T] COG3947 Response regulator containing CheY-like receiver and SARP domains | ali follow.. | 16 | 118 | ..............................TAKARELFAYLVQHRK-QPVRKDVLLEFFWPESDVKKGYAQLYSAIYQIRKMLDSLQMNSTVVS--DKSYKLHLN.......................................... | 190 |
5 | -7.920 | [S] COG3236 Uncharacterized protein conserved in bacteria | ali follow.. | 18 | 111 | .....................................LRALLLATAPAKLVEHTENDAYWGDGGHGKGKNRLGYLLMELREQLAI.............................................................. | 158 |
6 | -7.260 | [L] KOG0981 DNA topoisomerase I | ali follow.. | 4 | 209 | ...........YEPLPKNVKLIYDGNPVNLPPEAEEVAGFYAAMLETDHAKNPVFQDNFFRD----------------FLKVCDECNFNHNIKEFSKCDFTQMFHHFEQKREEKKSMPKEQKKAIKQKKDE................ | 312 |
7 | -6.800 | [K] COG1802 Transcriptional regulators | ali follow.. | 24 | 22 | ...................................................RQAIMSGRFTP-GERLIERELCETLGVIREALRRLEAEKLVSIVPHKGPIVAI........................................... | 77 |
8 | -6.730 | [U] KOG3317 Translocon-associated complex TRAP, beta subunit | ali follow.. | 9 | 52 | ............DETRARLLVSKQILNKYLVEKSDLLVRYTIFNVGSGAATKVRLVDSGFHPEAFDVVGGQPTAVVDRIAP--QTNFTHVLVVRPKAFGYFNFTAAEVSYKAVEESETLQLAVSSEP.................... | 164 |
9 | -6.690 | [K] COG1654 Biotin operon repressor | ali follow.. | 18 | 1 | ...........................MKDTTVPLTLISLL---ADGEFHSGEQLGERL-------MSRAAINKHIQTLRDW---------VFTVPGKGYSLPEPIQLLDADR.................................. | 71 |
10 | -6.650 | [K] COG2771 DNA-binding HTH domain-containing proteins | ali follow.. | 8 | 161 | .........LLTQKLTDLEHPMLMSNPVCLSHREREILQ--------------------WTADGLSISESTVNFHHKNIQKKFDAPNKTLAAAYAAALGL............................................... | 240 |
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9. Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018. Dunbrack RL Jr, Dunker K, Godzik A. Protein structure prediction in biology and medicine. Pac Symp Biocomput. 2000;(12):93-4. |