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Query: gi|16759012|ref|NP_454629.1| hypothetical protein (STY0019) [Salmonella enterica subsp. enterica serovar Typhi str. CT18], from S.typhi

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MIQAPVYRGFSPPGTEEEQTMTISIHASAFDVNSWYQKITLTFINESGNPVDMNHAAISFTASGHIDPWGNSGGTLKGNPPLTLNDSSYGTLETNNIIINNSDALLLQPGERGTLSFSLAATQVPVKMSAVTLTLASSSSEDAESATPSDQETPAIPAADEQPAESDVPEKDNDLQERGLTLNVSELNAASWYQHVTFTLTNLYAQAVDLNQLQLNFTASAHPDPYSPFQGTMLGNQAVTLASDGGWPIEKNTITINHDGALMLAAGDIAELQCYLAATQTPVAISDLNATLAHDPAHQGKICVHFPAMTQTVALKPVIELLFPAGETRRFVGEWGEVLTISDLSAGTYRLIVPVLANDEMQIAPVESSFTVTLQSGDAAAQVLast
1 -7.990[S] KOG3306 Predicted membrane protein  ali follow..  13  42..........................................................................................................................................................................................................................................................................................................TGRVKIPPSNVIGHIAKFSNVKVI--NGGQKITFLRPDGYFTFHEVPAGTHLIEVSAMG--------FFSPVRVDVSARHRGKV. 117
2 -4.540[S] COG3024 Uncharacterized protein conserved in bacteria  ali follow..  11  7.VNCPTCGKPVVWGEISPFRPFCSKRCQLIDLGEWAEEKRIASSGDQSDSDDWSE........................................................................................................................................................................................................................................................................................................................................ 61
3 -4.310[R] COG4110 Uncharacterized protein involved in stress response  ali follow..  15  1IADEPAPAAPTPVVTPPPVETKISLSKVSLTKENWHRGSSGFAGMFGSKGIDLDLGAFVELQDGYIQALGNAFGDYRDEPYVQLKGDDRTGDVSDGEWLH........................................................................................................................................................................................................................................................................................... 125
4 -4.260[S] COG4704 Uncharacterized protein conserved in bacteria  ali follow..  15  13............................................................................................................................................................................................................................................................................TTLGNLAWSWSARANFNGKLTVEIDGLKNKQGQVCVSIFTSSQGFPGDRKRVFDRQCTQINETPL----KLTFNNLKAGTYAVAAIQDLNGDGTLNPKFGDAAFILAGRNTTIQV 146
5 -4.060[R] COG3889 Predicted solute binding protein  ali follow..  10  507..KVERGPFTIPKNA-HAGEKAKVRVTYTCKFGKWHDGTPMTME-------DIKAAIAFSYEWSYKDGDNDPYYDEAMGASTRTLEQTLGFVFVNPTTYIVYSNITHPVADDQIAGNNAWWATVPYLRHAMEELVANPQKYGVTNNYTFTQLDLLVKDHVEDLKKVIEKLIEEKDVPWYLQGEITPDEAVKAYKSLL----------INKHGHAYDSNGPFYLDKYDPDKMLMFSGNPIPPDYWKKTLLIARLVPKGAEVPARVMAGKPLTVKVMLTLKEEFPDWGE-------KPADRGYVTVSIVDANGNEVYSGEAKLTTAGTFELNVPGD-----ETKGWSTGKYTAIIRGGLSKEVTSFTIKKTFVVIKPTTTSPQQT 883
6 -4.000[W] KOG4802 Adhesion-type protein  ali follow..  10  288..SAPPAPANLRLANSTVNSDGSVTVTIV-----WDLPEE-MVSSKSLVPTKKKRRKTTDGFQNSVILEKLQPDCDYVVELQAITYWGQTRLKSAKVSLHFTSTHATNNKEQLVKTRKGGIQTQPTRPLEVGAPFYQDGQLQVKVYWKKTEDPTVNWFPEACAHNRTTGSEASSGMTHENYIILQDLSFSCKY-KVTVQPIRPKSHS-KAEAVFFTTPPCSALKGKSHKPIGCLGEAGHVLSKVLAKPENLSASFIVQDVNI------TGHFSWKMAKANLYQPMTGFQVTWAEVTTESRQNSLPNSIISQSQILPSDHY-----------------VLTVPNLRPSTYRLEVQVLTPGGEGPATIKTFRTPELPPSSAH... 661
7 -3.960[M] COG4932 Predicted outer membrane protein  ali follow..  12 1127LQNATGSKLKEKLTTDASGNIEIT----DLAPGDYATPVNFTIDFNQSEAAKVSKTNTAKTGTVMLTKKDSATNAELADATFELRNEDE-TLVRENLVTDDNGEISVADLAPGDYKL----------------------IETKAPTGYQLDATPVNFTIDFNQSEVEKVSKTNTAKTGTVVLTKKDSATNAELADATFELRNESDTLV---------------------------RENLVTDDNGEISVADLAPGDYKLIETKAPAGDATPVNFTIDFNQS----EAAKVSKINTAKTGTVVLTKKDSATNAELADATFELRNESDTLENLVTDDNGEISVADLAPGDYKL-IETKAPTGYQLDATPVNFTIDFNQSEAAKVT 1469
8 -3.810[R] KOG4680 Uncharacterized conserved protein, contains ML domain  ali follow..  16......................................................................................................................................................................................................................................................................LLLVSPIVAIDVHYCEENAEYEVKVKEVDISPNPIAPGEATFTISANTGREISFGKLVIEVSYFGWHV-DFLVAHSQVLPGTPPGSYLLKMKMLDAKKKELT----KFSFDIGLRASVADI 153
9 -3.780[S] COG5475 Uncharacterized small protein  ali follow..  14  1MQNCPSSSKVKAFH-------LIQEAGMVFSVSE-EGGPRMIVTGYSSGMV............................................................................................................................................................................................................................................................................................................................................ 48
10 -3.770[S] KOG4838 Uncharacterized conserved protein  ali follow..  6LHTTNTAIVYKNSLCSFASLLVLAFIALSVPYSGISESRVLY----EQPNVEFNYEYIFVGTTDQGEYEEEESLVACSSFSQFNEQMESYTNSCTTTRYWTEDVD--YDGVTDRAHFQLELQDVPTRLVSFNLLVFFEAELQHKCDLSPPSVLAHQLQLPLHARLRNGHGELQLKQYVEFTCPFPGRNIKTQFRQVQLDTNSTNGNIDQFKMESL........................................................................................................................................................................ 229

FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 1 2 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Jambon M, Godzik A. New avenues in protein function prediction. Protein Sci. 2006 Jun;15(6):1527-9.