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Query: gi|16759013|ref|NP_454630.1| hypothetical protein (STY0020) [Salmonella enterica subsp. enterica serovar Typhi str. CT18], from S.typhi

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MIDAPALGNAKLTVEIADATQADERTVTLIANQPQLITRLLAGHHYTVNLQPAMINNRFISAPIQLTGFIPAAAQVAEVAVAYQQSALDTASFVTVDATILGLPDGVAPQRYLFSSGKYQYSLMLESGSDRQTLSLRFAPGLYDVQTDDIFIDSVPWRCEQAGPLRLLQKVNHVALEFLPGVTLQVKGWPDYLAHGGVTVNAPETVSLYRDIPFSALFKYDGFDGGGDPVPAAEVDVNGDVFLDYATLPIHKTVALVRQIEKEAGRSVMPVMVIYTANASGGSALVDLQDAQKLRNHFGNFITQCLAAQSYKDETHPVPATFVLNPDFLGALQQGPYGYTVVRQKNSVPVNAQLAAAIQALPAMAGFIAPSLPTFSDDLYGYIQAVNYLVRQFAPDVAFGWQTNVWATGTADWVLRDTADPVAEGQAIAGFIHELGVYSGEYAPDFIAFDEFERDCFSPDALAHYGWNATCWLNYLAMVKQVTKALLTPAMLWQIPGGHMPTVEEGVSKISAAHFASGGTFFMGDARIGSDPDTLSLQLLNTALNSATYGVPTVGDFLRKDKGYDWGQMQALNLPDFNVFSILWGGGSTISITTIHSNGEDGGWLADKMVEYYAAPRYFRLast
1 -10.400[G] COG5297 Cellobiohydrolase A (1,4-beta-cellobiosidase A)  ali follow..  11  21.............................................................................................................................................................IWKKLEYVMAASLLAGGTLSAPAVHAEAHVDNP-------------VGATAYVNPDYAKEVNSSIAKVSNASLKAKMEIVKSYPTSVW---LGLMAHLDAALAQKKANKPITVGFVIYDIPASNGELPLTAEGLRRYKKEYIDVIAGI----FANPKYKDIRIVNVIEPDGLPNLVTNLSDARCAKAKYTGIYEDGIKYALNKFSSIPNVYSYMDIA-DDNRAAAILLYTQLIQGTTAGFA-GFATDTANVTPLVEPNLPNPDMNVGGQPIIGFLIDTGRNGWGGAQRPTASTGSDVNTYVNSGRVDRRKHRGNWCN-MGLPPAAAPGGHLDAFVWIKPAGESDGSSRLIPNNQGKGFDKMCDPNFITADGVLTGALPNAPIAGEWFHDQFVMLINNAYPAIGGSTPKPTASSSPTPAPSSNISI-WNAGSCERVQVTNTASSPSTW................ 522
2 -5.510[F] COG3072 Adenylate cyclase  ali follow..  10  39..............................................................................................................................................................................................................................................................................................................................PTLLHYHPLMPGYLDGNVPKCLYTPDETQRHYLNELELYRGMSVQDPPKGELPITGV---TMGSTSSVGQSCSS---------DLDIWVCHQSWLDSEERQLLQRKCSLLESWAASLGV-----EVSFFLIDENRRHNESGSLGGEDCGSTQHILLLDEFYRTAVRLAGKRILWNMVPCDEEEHYDDYVMTLYAQGVLTPNEWLLGGLSSLSAEEYFGASLWQL---------KSIDSPYKAVLKTLLLEAYSWEYPNPRLLAKDIKQRLHDGEIVSFG---DPYCMMERVTEYLTA..... 315
3 -5.510[W] KOG4802 Adhesion-type protein  ali follow..  7  190.LRFTELQSGQLEVK-SEDDATHWQTVAQTTDERVQLTDIRPSRWYQFRVAAVNVHGTRGFTAPSKHFRSSKDPSAPPAPANLRLANSTVNSDGSVTVTIVWDLPEEPDIPVHLVPTKKKRRKTTDGFQNSVILEKLQPDCDYVVELQAITYWGQTRLKSAKVSLHFTSTHATNNKEQLVKTRKGGIQTQLPFQRRRPTRPLEVGAPFYQDGQLQVKVYWK----------------------------------------KTEDPTVNRYHVRWFPEACAHNRTTGSEASSGMTHENYIILQ--------------------LSFSCKYKVTVQPIRPKSHSKAEAVFFTTPPCSALKGKSHKPIGCLGEAGHVLSKVLAKPENLSFIVQDVNITGHFSWKMATWAEVTTESRQNSLPNSIISQSQILPSDHYVLTVPNLRPSTLYRLEVQVLTPGGEGPATIKTFRTPELPPSSAHRSHLKHRHPH-HYKPSPE............................................................................................................................ 678
4 -5.410[D] COG2385 Sporulation protein and related proteins  ali follow..  13  125...............................................................................................................................................................................................................................................................................................................................................................RWYRGKVRLIRQGNGVSAVNLVDIEEYLYSVAQAVTYAIYQTSKDSNRYYDLD---TTTATQVYKGMNNEYVSTVEAVE----------ATAGQVMTYNGKVILAAFHAASGGHTENVEDWMSPLPYLRGVVDY-SSPVFSWNFSNRDLSRHIGGIGTVTG------------TPLKVTPRGRIASIQVNGTGGRKTLTGNAIRQALKLRSTLFTVSRNGDNFTITG-----SGHGIGLSQWGAYGLAQKGTPYQQILSHYYQS..... 383
5 -5.080[S] COG3673 Uncharacterized conserved protein  ali follow..  12  20....................................................................................................................................................................................................................................................................................................................SDLNLLAEDSMKRLVFCFDGTWNRLSADTPTNVVLLAASIQRASP-KGVTQVIHYDEGVGTGRLEKLSGGMFGQGEAYRFLIFNYEVGYAFGFSRGAF-----------------SARVFLGFIRHAGILSRKHAARI-AMAHYRQRLSGLDPEGQKV-DAWRTANIAGYVQGSSPLLQIKYLVWDT-VGAM-----GLPAVLPGSKWLNRKHEFLDTTLTDMVLSARHAVARRKLFPITLWDNIDALNRTRQFDSEDPKAPYQQKWFPGTHGGVGGGGDIRGLSDGA-------WIVQGAKA......... 323
6 -5.010[S] COG4627 Uncharacterized protein conserved in bacteria  ali follow..  8  2.............................................................................................................................................................................................................................................................................................................................................................................................................................................DLKVVVGAGPYNNNPGWIHTQEEKLS---DRSMWEKRFTPESISAILAVWEHLTFREGVEAACYDFPSGYIRCAVPDGFFRDETYQAVVQVGGPGPKDHPAASHK------------IVHTYETISNMFKEAGFTVKLLEYFDENGAFLCEDWNGEDGVIFRSKKFDPRNQGEQIVFPSLIVDAIKPL... 182
7 -4.890[S] KOG1045 Uncharacterized conserved protein HEN1/CORYMBOSA2  ali follow..  10  143................................................................................................................................................................................................................................................................AALRRDGERCGSVPVSVIATVDAKINSRCKII-NPSVESDPFLAISYVMKAAAKLADYIVASPHGL-YPSEIVEALATHVSDSLHSREVAAVYIPCIDEEVVELDTLYISSNRHYLDSIAERL-GLKDGNQVMISRMFGKASCGSECRLYSEIPKKYLDNSSDASGTSNEDSSHIVKSRNA-----RASYICGQDIHGDA----ASVGYRWKSDDL-----DYDDVTVNSFYRICCGMSPNG-IAAQLPFAFTTKSNWRGPLPREILGLFCHQHRLAEPILSSSTAPVKSLSDIFRSHKKLKVSGVDDANENLSRQKEDTPGL------GHGFRCEVKIFTKSQDLVLECSPRKFYEKENDAIQ 498
8 -4.750[E] COG2755 Lysophospholipase L1 and related esterases  ali follow..  14  29..........................................................................................................................................................................................................................................................................................................................................................................................VGGDSTVCNYYPLNSSKQA--G-----WGQMLPHYIDKHTFQVRNMAQIARGFRND-AILKYIKPGDYFMLQLGINDTNPKHKESEAEFK----EVMRDMIRQVKAKGADVILSTPQGRATDFTSEGIHSSVNRWYRAS....................................................................................................... 162
9 -4.680[S] COG4755 Uncharacterized protein conserved in archaea  ali follow..  10  1...................................................................................................................................................................................................................................................................................................................................MESSFIGNLDE-------------IKLQKNLLTTLKDMEKKEKTEDMD-----DLILASRTAFQHMMRTLK-----AFD---WLQDPMVIKHMPREMLEDVKNTSWELLQ-----------RLLELD-------------------RHTSQFREMISKMSKEGKLDPLIWTRPVTE......................................................................................................................... 125
10 -4.620[S] COG1262 Uncharacterized conserved protein  ali follow..  9  5.............................................................................................................................................................................................................................................................................................................................................................................................................MLSIPGGAYLMGSPNFEGDADERPQHQVAIAPFFMGKYPVTQAQWRA-VAGLPKIKQALNPYPSGQNRPVENVSWHEVLEFCARLSEKTGRE---YRLP-----------SEAEWEYAGTTTSFHFGETITPDLANFSDSDIHNIEAKTRYRKETTDVGNFRVANAFDPWHNNYNGAPTDG-RRVLRGGS................................. 208
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 2 8 5   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. Discovering new genes with advanced homology detection. Trends Biotechnol. 2002 Aug;20(8):315-6.