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Query: gi|16759007|ref|NP_454624.1| putative regulatory protein (STY0014) [Salmonella enterica subsp. enterica serovar Typhi str. CT18], from S.typhi

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MGSKGANKSFDYNLIKILDAVILSGNAAMAAKKLGITPAAVSLALKRLQSYYPEELFSRGKGGLIPTAKAVDIHQNFSQVMKLVDDTFLCNSKKDEAFQITLLGSDIVESYYLSQLYNSDIFDRILINHFSVRNMSREHISELLFTAQGDLLISAEPLLESGIENQIIDSFKSFVCICSSKHMLSTLSQLSLHHFYSSRHALYQPGMGASVIYHDSELFKDELYYTGRRIVGYRSDSLNGLMSMIERTSLIALMPLKLALFYKNHRKYDIKFIQPPPELAFKSVQVYASWKKNSRNISTINEMVSMLQTLSSFRRLast
1 -43.100IDP00586 gene: metR; lysR-family transcriptional regulatory protein YPO3789 [Yersinia pestis CO92]  ali follow..  13  2.........IELKHLRTLQALRNTGSLAAAATQLHQTQSALSHQFSDLEQRLGFRLFVRKSQPLRFTTQGEILLQLAEQVLPQIKQALQTCNEPHQT-ALRIAIECHSCIQWLTPALDNFHKHWPQ-VTMDFKSGVTFDPQPALQQGELDLVLTSDILPRSGLHYSPMFD-FEVRLVLAPDHPLANKDRIEPEDLAPEVLMIYPVQRQR------LDVWRHFLQPAGVSPSSKNVDNTLLLIQMVSARMGIAALPHWVVESFERQGLVVTKTLGEGLWS-----RLYAAVRDGEQRQPVTEAFIRSARQHACD.. 291
2 -41.600IDP90977 gene: oxyR; DNA-binding transcriptional regulator OxyR [Yersinia pestis KIM 10] y0320 [Yersinia pestis KIM10+]  ali follow..  10  1.........MNIRDLEYLVALAEFRHFRRAADSCHVSQPTLSGQIRKLEDELGIMLLERTSRKVLFTQAGLLLVEQAKTVLREVKVLMASLQGESMSGPLHIGLIPTVGPYLLPQIIPMLHKTFPK-LEMYLHEAQTQNLLAQLDSGKLDCAILALVKETEAFIEIPLFD-EPMNLAIYADHPWANRERVEMHELAGEKLLMLEDGHC-----LRDQAMGFCFQAGADEDTHFRATSLETLRNMVAAGSGITLLPALAVPNERQRDGVCYL----ECYKPVPKRTIALVYRPGSPLRGRYEQLAEAIRDHMQE.. 295
3 -41.300IDP04639 gene: oxyR; oxidative stress transcriptional regulator [Francisella tularensis subsp. tularensis SCHU S4] FTT0556c [Francisella tularensis subsp. tularensis SCHU S4]  ali follow..  12  1.........MNTRTLEYIISVYETKSFITASEKCFVSQPALSMQIKKFEEYIGIQIFERGTKQVLITKSGMKIVNQAYKILDEVNNLKKIAELLLENGSITIGAFPTLCPYLMPKILPAIKQELPN-LSIAVIEEKTDILVKMLDQGKIDFALLATPTENYQFHRKKVFD-DKFYVAVAKTNPLAKNKQICIREIVKQNLMLLDEGHCLRDQTLKL------CALKEFNNNDFKGSSLETLRQMVSIDEGITLVPKIACTKADN-------VKYIDIDNRDFYREIDLVMRKSSIYEDLFAKIAKIISN...... 287
4 -40.300IDP92556 HTH-type transcriptional regulator ilvY [Vibrio vulnificus CMCP6] VV1_1076 [Vibrio vulnificus CMCP6]  ali follow..  13  1.........MNIKSLQLFIHLCDSKNFAKTAAAMHISPSALSRQIQKLEEETSQQLFTRDNRSVEITPAGKKLMPVALKMLNEWQQYQLQNRYSETELEIRLFCSVTASYSHLPELLSEFRLQHPF-IEFKISTGDPAQAMDKILNGEADIAISAKPTVPAKVAFEPISEIPLSVIAPQGVSSFTDEMNRDKPDWSSIPYIVPE--AGTARERANTWFKKMKI----KPNIYAQVSGHEAIVSMVALGCGIGIAPDVVINNSPVKEKIQRLKVA-----PIKPFELGVCCIKSQLENPLIQALWKVAESKYIVI. 296
5 -39.800IDP91526 gene: oxyR; hydrogen peroxide-inducible genes activator OxyR [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] lpg1815 [Legionella pneumophila subsp. pneumophila str. Philadelphia 1]  ali follow..  13  1.........MNLRDLHYFVILADVKHFGEAAKRCFVSQPTLSMQIKKLEEELGVVLFERTNKQVLLTDQGSKLLDRTRKILILIDEMKELARQSEDLFELRLGVIPTVSPYMLPLVMPELKNEYPR-LKVWLIEDQTHRLITKLEQGELDVAIMALP-IDKRFSCQTLYE-EKFYFACANTHPLAQAKSVNINDLKNQPIMLLEEGHC-----LREQAMAVCQSAKADDIADFTATSLETLRLMVQAGMGVTLLPALSTLTASTNH-----LKCIPFSEPAPSRILGLFWRAGTPRQVCFNAIAELITKNVQS.. 293
6 -38.500IDP95088 DNA-binding transcriptional activator AllS [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] YP_002918199 [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044]  ali follow..  13  2.........LDPETLRTFVSVAETGSFSRAAEKLYKTTATISYRIKLLEDNTGVALFSRTTRSVLLTPAGMHLLAQAREWLGWIDSMPGELQQINDERQVNIVVNNLMDPQAIARLLAWLTQRYPF-TQFHFSRQIYMGVWDTLLHDDFSLAIGVTEPLAENMAVYPLGE-VTWLFVMSPHHPLSQQTDLSEAQLRRYPAVNIEDSARRLTKRVAWRLPGQK---------EIVVPDIETKVAAHLAGVGIGFLPEPLCLPLIAQG----KLIARHIPTMRPPSPLSLAWRKD-HHGKAVQDIASLFSHSAPEIA 297
7 -37.200IDP02007 gene: lrhA; NADH dehydrogenase transcriptional repressor [Salmonella typhimurium LT2] STM2330 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  13  2INANRPIINLDLDLLRTFVAVADLNTFAAAAAAVCRTQSAVSQQMQRLEQLVGKELFARHGRNKLLTEHGIQLLGYARKILRFNDEACSSLMFSNLQGVLTIGASDESADTILPFLLSRISSVYPK-LALDVRVKRNAYMVDMVKSQEVDLVVTTNQPHSLD----LNLRTSPTHWYCAAEYVLQRGEPVPL---------VLLDDPSPFRDMVLETLNAAGIP-----RLAYVASTLPAVRAAVKAGLGVTARPVEMMS--------DLRVLGAADGLPPLPDTEYLLCRDPNSQNELAMVIFHAMESYQNPWH 292
8 -36.700IDP04296 gene: hexA; LysR-family transcriptional regulatory protein [Yersinia pestis CO92] YPO2556 [Yersinia pestis CO92]  ali follow..  16  3.NANRPIINLDLDLLRTFVAVADLNTFAAAAAAVCRTQSAVSQQMQRLEQLVGKELFARHGRNKLLTEHGLQLLGYARKILRFNDEACTSLMYSNMEGSLIIGASDDTADTLLPFLLNRVATLYPR-LAIDVRVKRSPFIADMLSSGEVDLAITTAKVDSHP----VILRTSPTLWYCSVDYQFQPGEPVPL---------VVMDEPSLYREMAIEHLTQAGVPW----RIAYVASSLSAIRAAVRAGLGVTARPIEMMS--------DLRVLGETEGLPGLPETRYVLCKDKQCDNELALAIFSALQNSYQHTM 292
9 -30.400IDP93839 gene: tcaR2; putative lysR-family transcriptional regulator [Yersinia enterocolitica W22703] CAI77371 [Yersinia enterocolitica W22703]  ali follow..  15  2.........FISKNLLVFITTVQEGSLTSAAIKLFSTPPPMSRSIKILEDNLGFKLFSRTTAGLKLTDRGEAFYKDIYPTYARLIDLGTRYKK-GKSGTINIGTHQLKS--KYAGFLCNYFLDSDN-YNIELQENTND-------INQLDVVMSIKEIKGYDFDIKLMAS-CKAILLYASHLNTL---PNKDEHLKKLPFIQSNIFSSSCC-----KRFFDHLKLSGYSEKILHIDDQDIRNNLIEKGAGLSIAVNGLNT....................................................... 233
10 -30.000IDP93880 LysR family transcriptional regulator [Yersinia enterocolitica subsp. enterocolitica 8081] YP_001004721 [Yersinia enterocolitica subsp. enterocolitica 8081]  ali follow..  10  1......MDHTDFNHLAVFITVAREKSFTRAAAHLGVSQSAISHSIRGLEERLGIRLLTRTTRGAVPTEAGERLLANLTPYYDGIETELATLGELKPGGTIRISSHDHPATTILWPKLSKLLKEYP---DITLEINVDYGLIDIVAGR-FDAGVRIGDQIAKDMIAMRISPDFRMIVVGSPDYFSRHPKPETPHDL--TSHNCANLRLSTHGGLFAWEFEKGGQEVKVQVPGQMIFNTSPQLLTAALEGYGLAYAPEDVVQRYIKEG----RLMPVLEEWSPLLPGYHLYYPSRRQALPAFTLILNALRYV..... 296
11 -27.600IDP01379 iron-regulated virulence regulatory protein IrgB VC0474 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  16  3..........DLSAVKAFHALCQHKSLTAAAKALEQPKSTLSRRLAQLEEDLGQSLLMRQGNRLTLTKAGEVFAVYSEQLLELANKSALQELNNQVTGELTLVVHPNLIRGWLSQVLDEFMQQHS---TLKIRLLSQFQHSDEVFEP--DLIIWIEHAAPMGYRKERLGYWRYAAY-ASPKYLAHRDKPTHPRELIHHPWIDFIACRRAELELHHPEFGSYSLPALESR---LQSDNLAMQADAIAKGRGIGLLPTWFANGFETAHPGSLIPC----GWQSQPTEINCFYPLGRHPLRLRLFIDALRQAR..... 293
12 -24.700IDP91790 LysR family transcriptional regulator [Acinetobacter baumannii SDF] ABSDF1465 [Acinetobacter baumannii SDF]  ali follow..  12  1..............MRVFNKVVETNSFSLAADSLGLPRASVTTTIQALEKHLQVRLLNRTTRKISLTPDGAVYYDRTARILADVADISFHDAERGPRGQLRIDVPVSIGRLILIPRLRDFHARYP---DIDLVIGLNDRPVDLVGEA-VDCAIRVGELKDSSLIARRIGTFQCATALEKYGEPTSIED-------LQKNHKAIHFFSSRTGRNFDWDFVVDDLIKSVSVRGRVSVNDGDAYIDLALQGFGIIQGPRYMLTNHLESG----LLKEVLPQWTPAPMPISAVYLQNRHLSLKVKVFVDWVAELFAG.. 291
13 -24.500IDP93837 gene: tcaR1; putative lysR-family transcriptional regulator [Yersinia enterocolitica W22703] CAI77370 [Yersinia enterocolitica W22703]  ali follow..  13  4...........LKRMSVFAKVVECGSFTGAARQLAMSVSSISQTVSKLESELNVKLLNRSTRRIGLTEAGRIYYQGCRRMLQEVQEVQLYAFNNTPTGTLRIGCSSTMAQNVLATMTAEMLKEYP---GLSVNLVTGIPAPDLIADG-LDVVIRVGALQDSGLFSRRLGSMPMVVC-AAKSYLAQHGTPEKPSDMTNFSWLEYSVRPDSNFELIAPEGITTQISPQGR----FVTNDSQTMIRWLKAGAGIAYAPLMWVIEEIKRG----EVEVLFKKYHSDPRPVYALYTEKDKMPLKVQVCIDYLTEYFKR.. 294
14 -11.100IDP90978 hypothetical protein y0549 [Yersinia pestis KIM 10] y0549 [Yersinia pestis KIM10+]  ali follow..  14  1MLLSTKQFR----HYTLALLLASGKDADDIYDKLSCSGPTLTRALKELRETYNAEIYSKSTHSYQLTEKGTLTPKVLRHIKDAIASHMI.................................................................................................................................................................................................................................. 88
15 -10.600IDP00934 gene: modE; DNA-binding transcriptional dual regulator STM0779 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  15  17.........ADPRRISLLKHIALSGSISQGAKDAGISYKSAWDAINDMNQLSEHMLVERAGGGAVLTRYGQRLIQLYDLLGQIQQKAFDVLSD-----DDALPLDSLLAAISRFSLQTSARNQWFGTITARDRDLVQQHVDVLLADGKTRLK---VALTAQSGERLGLEEGKEVLILLKAPWVGITRDARAADNQLSGTISHIERGAEQC-------------------EVLMALPDGQTLCATIPTSDAATLKEGDDVIAWFNADRVIIATL.......................................... 261
FFAS is supported by the NIH grant R01-GM087218-01
1 4 4 8 1 2   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Rychlewski L, Zhang B, Godzik A. Fold predictions for bacterial genomes. J Struct Biol. 2001 May-Jun;134(2-3):219-31. Review.