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Query: gi|16759011|ref|NP_454628.1| putative chitinase (STY0018) [Salmonella enterica subsp. enterica serovar Typhi str. CT18], from S.typhi

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MATSKLIQGDTITETTHAANGFDPATSDDKISYTSARVAKPVYNKYKNSTTKPKVFGYYTDWSQYDSRLQGNMSQPGRGCDLTNVSPTAYDKLIFGFVGITGFRKIDKEDRDVVAEAAALCGKVKYEPTFLDPWGDFQSYINLGFETSGWDVDPKTVTQANAKGMLGALRDMQAKAKAAGHTLALSMSIGGWSMSNGFHETAASDSSRKTFAKGVVKLFKQFPMFSEVDIDWEYPNDEGAGNPFGAEDGANYALLIAELRKQLDSAGLSNVKISIAASAVTTIFDHAKVKDLLAAGLYGINLMTYDFFGTPWAETLGHHTNRKALEEGGWAVETIVDHLLAEGFSADRINIGYAGYTRNARQVEIESLSPLKGSYNPGSGDTTGSFESGTSEWYDVIYSYLDLENQKGRNGFNVYTDQVADADYLYSPESKLFLSLDTPRTVKAKGEYAAKLGLGGVFTWTIDQDNGVLVNAVREGLGYEIESEVIDMEPFYFEGINVEKDDEQSDSDDAQKVNHAPKAAIELMVVGGSTVQLSGAGSSDEDNDELSFSWGVPSQIDVADKTAEIIEVVVPEVSEKTAFQFTLFVRDCYNEPSSQQRFVLTAVPALSQVQPEPEEEEEIIVPVPDEEEETTPAEDDTSADDKTSPYAQWDASTVYGANWGSFEIVSWKGHNYQVKWWSMGNQPDLNCGVGGAWTDLGAYLast
1 -107.000IDP05654 hypothetical protein lmo0105 [Listeria monocytogenes EGD-e] lmo0105 [Listeria monocytogenes EGD-e]  ali follow..  18  19.................................VVSIGAEPKRAKAAENVPQYRNVMYYGDWSIWGGE---------GNFYPKDIPADQLTHLNFAFLDFNSNG----------------------DLVFTDKDAAVGAPVG----------QEGVQWGGANAGVLNAI----QDLRAQNPNLKIGVSVGGWSKSGDFSTVAADPTKRANFVKNVMKFVKYTN-MDFVDLDWEYPASVRDADLVDPADKQNFITLLQDLRTALDKQGVKKYELSVALPAAKSTLENGIDVANLFKVVDFANVMTYDLNGA-WTPNSAHHTALYGNPKDPFSVDQTVKYLKEKGAVSNKIVVGAAFYTRGWNKVAAGTDTALPGLFQAAEANNENPIKTGDGGRAGGVWAYRSIDALKKTPTLKEYWDDTAKAPYLYSKETGEFYTYDNTRSIGYKAQYVKDNNLGGMISWMQSQDKTTLTKAIKTGLFGTSAIPQNAITYANLNVVATVKPYSENGVGYEITITNNEKADETNEVLKSTELSFETVKLPKPQGASYTFRLKSSASSVDVANISKIDNVTDKSATLTWTASTDNKAVAGYKVYRNGTEVGSVSGTTFTDSGLTAKTAYTYTVKAYDAAGNFSAASSALTVTTLDAATPPATPAWDAAKTYNKGDRVSYKGKTYEAQWWTQGNEPG--AEQWGPWLLIN.. 756
2 -106.000IDP01934 chitinase B [Bacillus anthracis str. `Ames Ancestor`] GBAA0385 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  20  22...................................TNFITPNVVLADSQKQDQKIVGYFPSWGIYG-----------RNYQVADIDASKLTHLNYAFADICWNGKHGNPSTHESGVPLQNKEVPNGTLVLGEPWADVTKSYP------GSGTTWEDCDKYARCGNFGEL----KRLKAKYPHLKTIISVGGWTWSNRFSDMAADEKTRKVFADSTVDFLREYG-FDGVDLDWEYPGVETPGGSYRPEDKQNFTLLLQDVRNALTKAGAKQYLLTIASGASQRYADH-TELKKISQILDWINIMTYDFHGG-WEATSNHNAALYKDPNDPFYVDGAIDIYTNEGVPADKLVLGVPFYGRGWKSCGKENNGQYQPCKPGSDGKLASKGTDDYSTGDTGVYDYGDLAANYNKNGFVRGWNDVAKVPYLYNATTGTFISYDDNESMKYKTDYIKTKGLSGAMFWELSGDCRTSPYSCSGPKLLDTLVKELLGGPITQKDIEPPTNVKNIAVTNKNSNSVQLNWTASTDNVGVTEYEITAGEEK---------------------WSTTTNSIAIKNLKPNTEYTFSILAKDAAGNKSQPTSILVKTDDANTTPPGG....................................................................................... 577
3 -86.800IDP05198 putative bifunctional protein: peroxiredoxin/chitinase [Clostridium difficile 630] CD1433 [Peptoclostridium difficile 630]  ali follow..  21  327...............KHNYKNYDYTSEKNTKKIAMKTLKDSKKLVRPQITDPYNPIVENANCPDINPIVAEYV-----LGNPTNVDAQLLDAVIFAFAEIDQSG----------------------NLFIPYP----------------------------------RFLNQLLALKGEKPSLKVIVAIGGWG-AEGFSDAALTPTSRYNFARQVNQMINEYA-LDGIDIDWEYPGSSASGITSRPQDRENFTLLLTAIRDVIG----DDKWLSVAGTGDRGYINSSAEIDKIAPIIDYFNLMSYDFTAG-ETGPNGHQANLFDSDLSLYSVDAMVRNLENAGMPSEKILLGIPFYGRLGAT---------------------------------ITRTYDELRRDINKNGYEYRFDNTAQVPYLVK-DGDFAMSYDDALSIFLKTQYVLRNCLGGVFSWTSTYDQANILARTIGINDPEVLKEELEGIY................................................................................................................................................................................................................. 706
4 -38.100IDP02717 gene: chi36; extracellular exochitinase Chi36 [Bacillus anthracis str. `Ames Ancestor`] GBAA3854 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  15  19.....................................PLAPFQAQAANNLGSKLLVGYWHNFD-----------NGTGIIKLRDVSPK-WDVINVSFGETGGDR----------------------STVEFSPVYGTDA----------------------------EFKSDISYLKSKGK--KVVLSIGGQNGV----VLLPDNAAKQRFINSIQSLIDKYG-FDGIDIDLESGIYNGNDTNFKNPTTPQIVNLISAIRTISDHYG-PDFLLSMAPETA-------YVQGGYSAYRSIWGAYLPIIYGV-KDKLTYIHVQHYNAGSGI-GNNYNQGTADYEVAMADMLLHGFPIGGNANNMFPA-----------RSDQVMIGLPATPAAAPSGGYISPTEMKKALDY---------------------IKGIPFGGKYKLSNESGY---PAFRGLMSWSINWDAKN....................................................................................................................................................................................................................................... 341
5 -37.000IDP01806 hypothetical protein lmo1883 [Listeria monocytogenes EGD-e] lmo1883 [Listeria monocytogenes EGD-e]  ali follow..  14  2..........NGKQVMVGGLSLLLVGAGLGAFGSTAQAATDDASVMPDISNKQVLVGYWHSWK---SSGKDGYQQGTSADIALKDTPKAYNVVDVSFMKGDGVNRIPTFKPVGIND--------------------------------------------------SDFRAQVGALNKEG--RAVLLALGGADGH-----VELKAGDEEAFANEIIRQVETYG-FDGLDIDLEQSAITAG------DNKTVIPAALKIVKDHYKAEG-KNFLITMAPEFPYLKPGSAYYLTSLANYYDYIAPQLYN-QGGDGVWVDETNQWIAQNNDTLKEDSFINGTRGYLKIPANKFVFGLPANVDA------------------------------------------------AATGY-----------------------VTDPQIVKNVFTRLQAKPVKGIMTWSVNWDAGKNKAGVP................................................................................................................................................................................................................................. 336
6 -10.500IDP91443 putative chitinase [Vibrio vulnificus CMCP6] VV1_0417 [Vibrio vulnificus CMCP6]  ali follow..  10  76...........................................................................................................................................................................................AASNPDNVKRTERVFPQSEWDFLTHMAAPEY--TYTRF--LKAIGKFPAFCGEYTDGRDSDAIC-----KSIVTAFAHFAQE----TGGHIAIDNVSDNPLGLEEWQQALVHVREMGWSEGQAGYTTGCGQNDW------------------QNKRWPCEA---GQGYFGRG-----------------------------------------------------------AKQLSYHFNGAFSEVMYDGDATVLLKNPALVADSWLNAIWFFLTPQAP-----AMLHVIDRTWVPSQREVDAGIGYGFGTTINVINGGIECGEQNKDKGQPVNRIRYWEGLASHYQIPVEADEK----------NTCWQQTPYGSLNLNGATDVLYTNWDGNWKYYADRPGGYSFECELVGFQTAYSALVPGDYEKCVTNFYGSHASWPEVRVVDKLDPVDPGTQPGGNEWSASKVYVAG----DQVTYKGATYKAKWWTQGNDPSLG----GPWELVAG. 477
7 -7.300IDP05409 putative pullulanase [Bacillus anthracis str. Ames] BA_2728 [Bacillus anthracis str. Ames]  ali follow..  10  342...........................................NKKPKLKNPEDAIIYELHVRDLSIQPESGIKQKGK------------------YLGVTEKGTKGPEGVKTGLDHMKDLGVTHVQLLPIFDYASVNEQYNWGYDPKNFNVPEGSYSTNPYEPTITELKQMIQTLHDNN--LRVVMDVGTFANGTGVGNDTASERTRKFMIDSVTYWAKEYN-LDGFRFDWDLNTPLAAELKANQKNAEGIAHFNDNIRDGLNGKENMEDRIKKGITAGIDYDTNSSTYQDPEQVLTYVE--AHD-NHTLWDKLELTNPGDSEEVRKQIHKLSSSILLTSQGIP---LHAG---FMRT----------------------------------KYGDHNSYKSPDSINQMDWLRRATFNNEVDYMKGRKKYPAFRMTSAEQIKTHVSFIDAPK--NTVTYTIEGNKHE....................................................................................................................................................................................................................................... 790
8 -6.890IDP05250 hypothetical protein lmo2446 [Listeria monocytogenes EGD-e] lmo2446 [Listeria monocytogenes EGD-e]  ali follow..  10  331........................SDFHSQFQMASKVEDKYSFVLDNDGDMTNMLDYYVISGKDQNDIVNNYTDITGK----TTLLPK------WAFGLWMSANEWDRESDVSSALSNAKANDIPATGFVLEQWSDEETYYIWNNATYTAKKNGEAFSYDDFTGKWTDPKGMVDSVHDAG--MNIVLWQGAWFGNGILLDFT-NKDAVDWWTSQREYLLTEVG-IDGFKTDGGEMVWGRDTTFSNGEKGQEMTDYVSSYFDFAKSINPEAVSFSRSGTSGAQK------------------------SGIYW---SGDQTSTFD------SFQASLKAGLSASTS------GVSYWAWGFTGDYPTAE----AAFAPSDPSPSEERSPWNAVARTGDETILPTFQKYLYTRMNL-------LPYIYTAAKDMAMDYEDVNARDLDEQYMFGDDLEG---WVHPGGETISYYADVDTLPVFAKAGAI-NMTDGYQLGQNVGNDLKSYDNLTFRVYPSGDSEYSFYDDVNGGEMRDISVSEDFANEKVSVDLPAMADMQVFSTEPTSVTIDGADVAKADTLDAFNEATTGYYYDTVQNLTYVKAAAKDAKQAIVLNGVNHAPYEAEFGHLTNVTTASDVAGFDAEKEAVEFDIDAVDGASDYTMEVRYSAGVDATRTVYINGKKQQITLPKTANWDTWNTV 1057
9 -6.690IDP91204 shikimate 5-dehydrogenase [Bacteroides thetaiotaomicron VPI-5482] BT_4215 [Bacteroides thetaiotaomicron VPI-5482]  ali follow..  11  3.........................................................................................................................................................................................KYGLIGYPLRHSFSIGYFNEK------------------FRSEGINAEY-----------NFEIPNINDFMEVIEENPNLCG-----LNVTIPYKEQVIPFLNELDRDTAKIGAVNVIKIIRQPKGKVKLVGYNSDIIG--QPLLQPQHKKALILGTGGASKAVYHGLKNLGIESVFVSRTHKTDDMLTYEELTPEIMEEYTVIVNCTPVGMYPKVDFCPNIPYELLT---PNHLLYDLLYNPNVTLFMKKGEAQGAVT-LEMLLLQAFAAWEIWH.............................................................................................................................................................................................................................................. 247
10 -6.640IDP05249 hypothetical protein BAS2289 [Bacillus anthracis str. Sterne] BAS2289 [Bacillus anthracis str. Sterne]  ali follow..  12  16...................................SPHSTYAEANTTYKKHELRAVWIASDW----PSKTGLPIENQKQEFIRLLDDVKNTGMNAVVVQIKPTADAFYPSN-------------------YGPWSEYIT---------------------GTQGKDPGYDPLAFMVDEAHKR----IEFHAWMNHTDINRLSNNPEVKKFITEGALEIVQNYDI-DALHMDYFYPETYNNGRFTNIEDRNNVNELVKDLNTAIKHE-KSYVKFGISPFGVWRNIADDPTGSNTTAGQRNYDDLYADTR--EWKGFIDYITPYWNIGFTPAAYDILVDWWVKETNNKPHLYIGQAAY--KINNNSVPAWSNPEEYPRQIELNRLYPEIKG-----SMHFSLKDINNNPLG-----IKDRLSKDIYKYPALIPSMPWLDHDPPKQPTLKGAIPRDEGIAIGIIDDREN......................................................................................................................................................................................................................................... 439

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Doctor KS, Reed JC, Godzik A., Bourne PE. The apoptosis database. Cell Death Differ. 2003 Jun;10(6):621-33. Review.