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Query: gi|16759013|ref|NP_454630.1| hypothetical protein (STY0020) [Salmonella enterica subsp. enterica serovar Typhi str. CT18], from S.typhi

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MIDAPALGNAKLTVEIADATQADERTVTLIANQPQLITRLLAGHHYTVNLQPAMINNRFISAPIQLTGFIPAAAQVAEVAVAYQQSALDTASFVTVDATILGLPDGVAPQRYLFSSGKYQYSLMLESGSDRQTLSLRFAPGLYDVQTDDIFIDSVPWRCEQAGPLRLLQKVNHVALEFLPGVTLQVKGWPDYLAHGGVTVNAPETVSLYRDIPFSALFKYDGFDGGGDPVPAAEVDVNGDVFLDYATLPIHKTVALVRQIEKEAGRSVMPVMVIYTANASGGSALVDLQDAQKLRNHFGNFITQCLAAQSYKDETHPVPATFVLNPDFLGALQQGPYGYTVVRQKNSVPVNAQLAAAIQALPAMAGFIAPSLPTFSDDLYGYIQAVNYLVRQFAPDVAFGWQTNVWATGTADWVLRDTADPVAEGQAIAGFIHELGVYSGEYAPDFIAFDEFERDCFSPDALAHYGWNATCWLNYLAMVKQVTKALLTPAMLWQIPGGHMPTVEEGVSKISAAHFASGGTFFMGDARIGSDPDTLSLQLLNTALNSATYGVPTVGDFLRKDKGYDWGQMQALNLPDFNVFSILWGGGSTISITTIHSNGEDGGWLADKMVEYYAAPRYFRLast
1 -7.150IDP91345 transposase [Vibrio vulnificus CMCP6] VV1_3181 [Vibrio vulnificus CMCP6]  ali follow..  13  13............................................................................................................................................................................................................................................................................................................................................................................SSIDFRNKASMAWKAQLEVNAVLTALLALNPQ-SLGYQRSRWRTEPMAIEVNRIFGFNAHSSTIRRWVPKLGIVWRRACISKIQIKKPNSPE.................................................................................................................................................................... 103
2 -5.240IDP05367 conserved hypothetical protein [Bacillus anthracis str. Ames] BA_3326 [Bacillus anthracis str. Ames]  ali follow..  11  85........................................................................................................................................................................................................................................................NQAQKQQAIILIQELLKRN-IQVIVEPFPYIQQGNVGETEWNPSNINDFFWNWKTVILQDIFNTITSKYNVYGLKIASNFVNMEYAEGY--------------------------------------------WSDTIDFVRQQYKGNVLYQ------MNWWLTASFDPSYEAKFVEKINRPYLKKV---------DIVSIDSWGKRNPSYEEVKQSLFATNRGQNVVQQLEQLHKATGKPVYFGGFNVPARE---------------------------------------LGLQNPWNPDVSNVFSKDVQLNGWRAYRDVLEPKP-KGFSIWFIGSNNSTHAYQIHSKEAE-----AVINGWYRK..... 355
3 -5.230IDP95249 ferric acinetobactin binding protein [Acinetobacter baumannii ATCC 17978] YP_001085407 [Acinetobacter baumannii ATCC 17978]  ali follow..  7  20...................................................................................................................................................................................................................................................................................................DYIPHFLEKYKKDAQIQDLGAIVQPNMERIYALKPDLI-----------TPLHVNQYQELSKIAPTIHYDINFNNSESNHIGLVKDHMMTLGKIFNK--EDLARQKVSELDEQVKQVQAVT-HNNGAFSNFGIQSRYGFIFNAFGVKPKKADPDILYIVDRTAVMEHRSNINAASVENPLLRQ-TKAWKN-GRVIFVDADAWYTTAASPTSLKIVMEDVKKGYQ......................................................................................................... 259
4 -5.070IDP02652 gene: leuC; isopropylmalate isomerase large subunit [Bacillus anthracis str. `Ames Ancestor`] GBAA1422 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  9  113........................................................................................................................................................................................................................................................................................................................ELGLTQPGKTIVCGD--SHTATHGAFGALAFGIGTSEVEHVLATQTLWQRKPKAMGIELKGKLQKGVYA--DIILHLLSKYGVAVGTGYVMEFYGET--------GTMEMEERMTLCNMAIEGGAKAGIIAPDYVKGRKYAPRDYETFEKKWFELYTDADAIYDLHIS-IDVTDLAPYVTWGTNPSMGVRIDEKLPEKHDVNDERAFSYMGLIPGQSTYDIPVQHVFIGSCTNSRLSDLEIAASVVKGRK----SKRVRDAAMQKGLHHIFEEAGFEWREPGSTSNRNFEGRQGKGARTHLVSPA... 438
5 -4.920IDP05452 collagen adhesion protein, C-terminal [Bacillus anthracis str. Sterne] BAS5207 [Bacillus anthracis str. Sterne]  ali follow..  7  66....ETLEGAVFKIVNRDTNEDARTNLVTNSEGKLVVDDLRP-GNYKLIETKAPTY---YDVNVEPIEFTIEKGQQTLLPLTFKNSLTKGKKLIKEDDVESSIALAGAVFTLQDANGTEIAKDLKTDEHGVLVI-PDLAPGDYQFIETALDQTPIKFTIERSQTKHVFVTATNSLTKGSVELIKVDDVEENTTLEGAIVNKDGHDVRTDLTTDKNGRLVVDELPPGNETPIKFTVKKGQEKIASVTATNSLTKGAVELSKVDDIDGSTLKDAVFKIVDMNGNDVRTDLTTNKDGKISVSDLRPGDYQFVETK-----APTHYDLNQTPINFTVEKSQTATASVTAKNSLTKGAVELTKVDDIDGTTLEGAIFKIVDQNVSDLRPGDYQFVETKAPT---HYDLN-------------QTPINFTVEKSQTATASVTATNSLTKGAVELTKVDDIDGATLEGAVFKIVDMNG-----DVRTDLTTDKDGKISVSDLRPG---------------------DYQFIETKAPKH--NQNPINFTVEKSQTATASVTATNSLTKGAVELMKVDDIDGTTLEGAIFKIVDSN-GHDVRADLTTDKDGKISVSDLRDYQ....... 667
6 -4.870IDP05522 gene: nanA; N-acetylneuraminate lyase [Clostridium difficile 630] CD2240 [Peptoclostridium difficile 630]  ali follow..  9  1.............................................................................................................................................................................................................................................................................................................................................................MKIKIGGKDMRTTDMKGIYSALLVSFDKNEKGLRQIIRHNIDVCKVDGLYG------STGENFMLSTDEKKAKDEVKEEIKLIAQVGSVNLKEAVELAFTTDLGYDA----SAVTPFYYKFDFEEIKHYYNTIINSVDNRLIIYSIPFEKIIGVKFTAADFYERMRKTFPNKLIFAGFDEMMLPATVLGVDGAIGSTFNVNGVRARQIFELTKNEKISEALEVQHVTNDLITDILGNGLYQTIKLLLETDEMKSRAKEIYRKYF....... 302
7 -4.860IDP04195 gene: spoIID; stage II sporulation protein D [Clostridium perfringens ATCC 13124] CPF_2448 [Clostridium perfringens ATCC 13124]  ali follow..  8  72.................................................................................................................................................................................................................................................................................................................................VPLEEYVLSVVSSE------------MPATFHEEALKAQSILARTFVINKLITGCNNIKEG------ICDTTHCQAYLNINEKAWGKDGDEYLKKLKKVVKETEGKVLSY-----------NDQLVKYPQYFSTSSGNTEDAVAVFSED-----VPYLKSVESEEISPKYESEISISDFKSKIKKSIPNSDLGNNITEEVKILNRNTGGTVNDIK-------IGEATIKGKEFRKIFGLNSANFTLEVLDDNIKIKC-----YGHGVGMSQWGANVMAKEGSKYDEILEHYFKG..... 328
8 -4.790IDP91417 arginine repressor [Vibrio vulnificus CMCP6] VV1_0674 [Vibrio vulnificus CMCP6]  ali follow..  8  1...............................................................................................................................................................................................................................................................MRPSEKQDNLVRAFKALLKEERFGSQGEIVEALKQEGFENINQSKVSRMLTKFGAVRTRNAKMEMVYCLPTE-----------------LGVPTVSSSLRELVLDVDHNQALVV-------HTGPGAAQLIARMLDSLGSEGILG---VVAGDDTIFITPTLTITTEQLFKSVCELFEYAG........................................................................................................................................................................................ 156
9 -4.790IDP95370 set238a-005 [Vibrio cholerae]  ali follow..  9  1...MSSTGAHPHCQPCENLKH--------------------------IEIIVRDEHNQPFEGVSGVLIDAMKNKHPIELNASPILIENLAPGPVEIELDLNAAQDKSHPRNEETAKPVEEFSSSYSAHKSGPVVYQEITTGDLTKLPKEIVLPTNHQKGKAGTLKLFTDKTYILQVRAYKFITLRVGMFFD----GTANNTYSAQWGKQQLENYYRKWKAKYDAECEINSK-----------------NSNGTKKEVPITALSNDCFTYPKKDNFILSLFKNDEGEMETVAGSASNELTNVQKLYGLFLRNEYSTELNTLNYSE------YITGIGTGNSTAIAPADESIVVGQGLGIGKYGVTAKVTTG-IQMLSKNMREVIGDFKEKNVEIKPDGIEKLQFDVFGFSRG----------AAAARHFINVVLDGKNGEFAKTFTLACQKANLPLIYNFDWDESDEMKANCEITFAGLFDTVAS------------VVNIFSKNSPLGLDLNTHKDNGDVRLWIDPRRVRRAVHLTADPTI-----------ECRDNFSLNHLNSTDEEHFHEFVLPGAHSDI-GGGYYSRLSF.......................... 508
10 -4.700IDP02528 gene: folD; methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase [Bacillus anthracis str. `Ames Ancestor`] GBAA4405 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  9  17.............................................................................................................................................................................................................................................................AQLKEEVVKLKEQGIVPGLAVILVGEDPASRSYVKGKEKGCEQVGIYSELIEFPETITEERLLAEIDRLNGDDRINGILVQLPLPKHIEEKAIIERISPEKDVDGFHPISVGRMMTGQDTFLPCTPHGIVELVKETVVVIGRSNIVGKPVGQLFLNENATVHSKTQNMKELTKLADILIVAVGR-PKMVTADYIKEGAVVIDVGVNRLETGKLCGDVDFDNVLDVASYIT----------PVPKG.......................................................................................................................... 261
FFAS is supported by the NIH grant R01-GM087218-01
1 4 4 8 1 2   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Rodrigues AP, Grant BJ, Godzik A, Friedberg I. The 2006 automated function prediction meeting. BMC Bioinformatics. 2007 May 22;8 Suppl 4:S1-4.