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current user: public |
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Query: gi|16759009|ref|NP_454626.1| hypothetical protein (STY0016) [Salmonella enterica subsp. enterica serovar Typhi str. CT18], from S.typhi |
. 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 . 140 . 150 . 160 . 170 . | |||||||
# | Score | Template | Links and tools | %id | First | MNPIIDGIIALEGGYVFNPKDKGGATHWGITEATARAHGYAGDMRDLTHAEAYAILEEDYWIKPGFDVISTLSWPVSFELCDAAVNIGDYHPSAWLQRWLNVFNHEGKRYPDVHVDGNIGPRTLAALEHYLAWRGQEGEAVLVKALNCSQGMYYLNVAEKNHNNEQFIYGWIKNRVT | Last |
1 | -7.640 | sp|Q8WUM4|PDC6I_HUMAN Programmed cell death 6-interacting protein OS=Homo sapiens GN=PDCD6IP PE=1 SV=1 | ali | 12 | 112 | ..........................................ALASLGYEKSCVLF-----------NCAALASQIAAE--NLDNDEGLKIAAKHYQFASGAFLHLSALSREPTVD--ISPDTVGTLSLIMLAQAQEMKDAIIAKLANQAADYFGDAFKQCQYKDTLPKEVFPVL.. | 245 |
2 | -6.870 | sp|Q9UFV1|TBC29_HUMAN Putative TBC1 domain family member 29 OS=Homo sapiens GN=TBC1D29 PE=2 SV=1 | ali follow.. | 13 | 1 | ...........................................MGHLDKEGLCTQGSSFSW-------NDGISLGLTPCLWDMYLLEGEQ----LMLITSIAFKVQRSLYEETNKETWGPATPRALKGTGRARPICESLHSSLQALTASESSRGPSLLQTPPR.............. | 115 |
3 | -6.400 | sp|Q8TCX5|RHPN1_HUMAN Rhophilin-1 OS=Homo sapiens GN=RHPN1 PE=2 SV=1 | ali | 14 | 55 | ..........................................QQRALAFEKGSVLF-----------NIGALHTQIGAR--DRSCTEGARRAMEAFQRAAGAFSLRENFSHAPSPD--MSAASLCALEQLMMAQAQE-AQLRLAQEAAQVAAEYRLVMAQPPVHDYVPVSWTALV.. | 194 |
4 | -6.370 | sp|O15457|MSH4_HUMAN MutS protein homolog 4 OS=Homo sapiens GN=MSH4 PE=2 SV=2 | ali | 11 | 4 | .....SLILIDELG-------RGTNTEEGIGIC-------YAVCEYLLSLKAFTLFATHFLELCHIDALYPNVENMHFEVQHVKNTSRNKEAILYTYKLSKGLTEEKNYGLKAAEVSSLPPSIVLDAKEITTQITRQILQN.................................... | 125 |
5 | -5.930 | sp|Q8IUC4|RHPN2_HUMAN Rhophilin-2 OS=Homo sapiens GN=RHPN2 PE=1 SV=1 | ali | 16 | 58 | ..........................................SQQNLLLEKASVLF-----------NTGALYTQIGTR--DRQTQAGLESAIDAFQRAAGVLNYKDTFTHTPSYD--MSPAMLSVLVKMMLAQAQEFMLVKVAQEAAKVGEVYQQLMSQAPVKENIPYSWASLA.. | 195 |
6 | -5.870 | sp|Q9H3S7|PTN23_HUMAN Tyrosine-protein phosphatase non-receptor type 23 OS=Homo sapiens GN=PTPN23 PE=1 SV=1 | ali | 12 | 106 | ..........................................AHEDIKYEQACILY-----------NLGALHSMLGAM--KRVSEEGMKVSCTHFQCAAGAFAYREHFPQAYSVD--MSRQILTLNVNLMLGQAQERKSFLVARISAQVVDYYKEACRAASLLGRIQKDWKKLV.. | 241 |
7 | -5.860 | sp|Q8WWU5|TCP11_HUMAN T-complex protein 11 homolog OS=Homo sapiens GN=TCP11 PE=2 SV=1 | ali follow.. | 8 | 62 | .............................IGMNCDYYMEEKVLPPSSLEGKVKETVHNAFWDHLKEQLRIEIEEALDMDLLKQEAEHGALKVLYLSKYVLNMMALLCAPVRDEAVQKLENIQVLGRMKDMVNYTIQSLQPHLQEHSIQYERAKFQELLNKQPSLLNHTTKWLTQAAG | 253 |
8 | -5.830 | sp|P42695|CNDD3_HUMAN Condensin-2 complex subunit D3 OS=Homo sapiens GN=NCAPD3 PE=1 SV=2 | ali | 9 | 15 | ..........................................CPLDLRLEWVDTVWELDF-------ETEPLDPSIEAEIIETGLAAFTKLYESLLPFATGEHGSMESIWTFFIENNVSHSTLVALFYHFVQIVHKKNVSVQYREYGLHAAGLYFLLVPGSVANQVFHPVMFDKCIQ | 145 |
9 | -5.800 | sp|Q6UXR6|YI004_HUMAN(removed signalp:1-29) Putative uncharacterized protein UNQ6494/PRO21346 OS=Homo sapiens GN=UNQ6494/PRO21346 PE=5 SV=1 | ali follow.. | 16 | 7 | ................KRDEDGDGEGPGDVTAGVSRAAGSPSGWEAPWVQQPRCCRRATPVCCAGQGPPRSLQQGGSEVLLDWLPSSGPKVAKQVFQVAAELLQHPEHFVPSSVPEGCVGSLKGRAYPSCVPKRDPEHSRE.................................... | 147 |
10 | -5.770 | sp|A8MT19|RHN2L_HUMAN Putative rhophilin-2-like protein OS=Homo sapiens PE=5 SV=2 | ali follow.. | 15 | 123 | ..........................................SQQNLLLEKASVLF-----------NTGALYTQIGTW--YWQMQAGLQSAIDAFQRAAGVLNYKETFTHTPSYD--MSPAMLSVLVKMMLTQAQEFMLVKVAQEAAKVGEVYQQLMSQALVKENIPYSWASLA.. | 260 |
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9. Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018. Jaroszewski L, Rychlewski L, Zhang B, Godzik A. Fold prediction by a hierarchy of sequence, threading, and modeling methods. Protein Sci. 1998 Jun;7(6):1431-40. |