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Query: gi|16758999|ref|NP_454616.1| putative amino-acid transport protein (STY0006) [Salmonella enterica subsp. enterica serovar Typhi str. CT18], from S.typhi

Results of FFAS03 search in NEW_HUMAN_DOMAINS
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MPEFFSFINEILWGSVMIYLLLGAGCWFTWRTGFIQFRYIRQFSRSLKGSLSPQPGGLTSFQALCTSLAARIGSGNLAGVALAIAAGGPGAVFWMWVSAIIGMATSFAECSLAQLYKERDPTGQFRGGPAWYMARGLGMRWMGVVFALFLLVAYGLIFNSVQANAVSRALHFAFNIPPLISGIALAFCALLIIIRGIKGVARLMQWLIPLIALLWVAGSVFICLWHIEQMPGVIASIVKSAFGWQEAAAGAAGYTLTQAITSGFQRGMFSNEAGMGSTPNAAAAATSYPPHPVAQGIVQMIGVFSDTIIICTASAMIILLAGNHASHSSTEGIQLLQHAMVSLTGEWGASFVALIVILFAFSSIVANYIYAENNLFFLRLHNAKAIWLLRLATLGMVIAGTLISFPLIWQLADMIMACMAITNLTAILLLSPVVYTLAGDYLRQRKLGVRPQFDPRRFPDIEPQLAPDTWDAASRDLast
1 -5.690tr|F8WAF8|F8WAF8_HUMAN Uncharacterized protein OS=Homo sapiens GN=ZNF140 PE=4 SV=1  ali   10  1..........................................MSQDLGRGFLSPTTTCLAEPQDPVPCSSFSGVSDIQRCGHRLLPGG------------VEMASACSKRFVQMCNVGELWPSGLTGSFHF......................................................................................................................................................................................................................................................................................................................................................... 77
2 -5.520sp|Q9Y4D8|K0614_HUMAN Probable E3 ubiquitin-protein ligase C12orf51 OS=Homo sapiens GN=C12orf51 PE=1 SV=5  ali   15  8............................................................................IGSTMSTVHLSSDGTYFWIWSPASLNEKTPKGHSVFMDIFELVVENGVFVAN............................................................................................................................................................................................................................................................................................................................................................ 60
3 -5.020sp|Q56UN5|YSK4_HUMAN SPS1/STE20-related protein kinase YSK4 OS=Homo sapiens GN=YSK4 PE=1 SV=1  ali   16  46.............................................................................................................................................................................................................................................................................HDSLANKSITYQMFGKTLSGTNSISQEIMDSVEELTDELLGCLAAELLAL............................................................................................................................................................. 97
4 -4.760sp|Q13790|APOF_HUMAN Apolipoprotein F OS=Homo sapiens GN=APOF PE=1 SV=2  ali   12  6.............................................................................................................................................................................................................QLLPGVGTFYLGTALYYATQNCLGRDGAIDLGYDLLMTMAGMSGGPMGLAISAALKPALRSGV................................................................................................................................................................................................................ 75
5 -4.700sp|P50221|MEOX1_HUMAN Homeobox protein MOX-1 OS=Homo sapiens GN=MEOX1 PE=2 SV=1  ali   18  1...................................................................................................................................................................................................................................................MDPAASSCMRSLQPPAPVWGCLRNPHSE--GNGASGLPHYPPTPFSFHQKPDFLATATAAYPDFSASCLAAT................................................................................................................................................................. 70
6 -4.420sp|Q96DY7|MTBP_HUMAN Mdm2-binding protein OS=Homo sapiens GN=MTBP PE=1 SV=1  ali   22  5............................................................YHLLKRSISASINPEDSTFPACSVG-GIPGSKKWFFAVQAIYGFYQFCSS.............................................................................................................................................................................................................................................................................................................................................................................. 53
7 -4.400sp|Q8NEB7|ACRBP_HUMAN Acrosin-binding protein OS=Homo sapiens GN=ACRBP PE=2 SV=1  ali   17  7............................................................LASQSLSIGNQVGSPESGRFYGLDLYGGLHMDFWCARLATKGCEDVRVSGWLQTEF........................................................................................................................................................................................................................................................................................................................................................................ 62
8 -4.340sp|Q9BVV6|K0586_HUMAN Uncharacterized protein KIAA0586 OS=Homo sapiens GN=KIAA0586 PE=1 SV=4  ali   20  9............................................................................................................................................................................................................................................LFSPSREMPTFSGTLEGHLIPMAILLGQTQ--------SNSDTMPPAGVIVSKPHPVT...................................................................................................................................................................................... 58
9 -4.270sp|Q3ZCV2|CA177_HUMAN Uncharacterized protein C1orf177 OS=Homo sapiens GN=C1orf177 PE=2 SV=3  ali   18  7...................................................................AAGAHGWNRVGSTATKWFTGAPGVQSHRFDISAVYPNWKKFSTFTEAPYSTRYSTQVSHIGPGTY........................................................................................................................................................................................................................................................................................................................................................ 72
10 -4.100sp|Q49AJ0|F135B_HUMAN Protein FAM135B OS=Homo sapiens GN=FAM135B PE=2 SV=2  ali   12  34........................................................................................................................................................................................................................................................................SQVLKNQELKAGTSIMGSHLTSAETFTLDSLKAVEV----VNLSVSCTATCL................................................................................................................................................................ 81

FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 6 1 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Li Z, and Godzik A. Modeling and Analyzing Three-Dimensional Structures of Human Disease Proteins Pacific Symposium on Biocomputing 11:439-450(2006) [PDF]