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Query: gi|16759005|ref|NP_454622.1| molecular chaperone DnaK (STY0012) [Salmonella enterica subsp. enterica serovar Typhi str. CT18], from S.typhi

Results of FFAS03 search in NEW_HUMAN_DOMAINS
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MGKIIGIDLGTTNSCVAIMDGTQARVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQDEEVQRDVSIMPYKIIGADNGDAWLDVKGQKMAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYGLDKEVGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDTRLINYLVDEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIKVTRAKLESLVEDLVNRSIEPLKVALQDAGLSVSDINDVILVGGQTRMPMVQKKVAEFFGKEPRKDVNPDEAVAIGAAVQGGVLTGDVKDVLLLDVTPLSLGIETMGGVMTPLITKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRASDNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSGLNEEEIQKMVRDAEANAESDRKFEELVQTRNQGDHLLHSTRKQVEEAGDKLPADDKTAIESALSALETALKGEDKAAIEAKMQELAQVSQKLMEIAQQQHAQQQAGSADASANNAKDDDVVDAEFEEVKDKKLast
1 -8.830sp|O43301|HS12A_HUMAN Heat shock 70 kDa protein 12A OS=Homo sapiens GN=HSPA12A PE=1 SV=2  ali   18  1.............................................................................................................................................................................................................................................................................................................................................................................................LFGLDPAVIKVRRSPLTYGVGVCTDVFDKFISADQSVALGEKRSYTPAKPSQLVIVINIYSSEHDNVSGVKKCGTLRLD-LTGTSGTAVPARREIQTLMQ--IKATAIDIATSKSVKVGID........................................................................................................................................ 152
2 -4.990sp|Q9BXQ6|CECR6_HUMAN Cat eye syndrome critical region protein 6 OS=Homo sapiens GN=CECR6 PE=2 SV=1  ali   25  2........................................................................................................................................................................LNAAAAAAASWGQASGPGSCSRLLRLLGGCLVDVPLLALR.............................................................................................................................................................................................................................................................................................................................................................................................................................................. 41
3 -4.650sp|Q9UBX5|FBLN5_HUMAN Fibulin-5 OS=Homo sapiens GN=FBLN5 PE=1 SV=1  ali   18  27..........................................................................................FYMRQTGPISATLVMTRPIKGPREIQLDLEMITVNTVINFRGSSVIRLRIYVSQY............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 81
4 -4.390sp|O95967|FBLN4_HUMAN EGF-containing fibulin-like extracellular matrix protein 2 OS=Homo sapiens GN=EFEMP2 PE=1 SV=3  ali   18  5..........................................................................................FYIRQINNVSAMLVLARPVTGPREYVLDLEMVTMNSLMSYRASSVLRLTVFVGAY............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 59
5 -4.220sp|Q9H8Y5|ANKZ1_HUMAN Ankyrin repeat and zinc finger domain-containing protein 1 OS=Homo sapiens GN=ANKZF1 PE=1 SV=1  ali   28  1...............................................................................................................................................VLFQNAQGQF---------LYAYRCVDPPEEAELLLQNLQSRGPRDCVVLMAAAGHFAGAIFQGREVVTHKTFH..................................................................................................................................................................................................................................................................................................................................................................................................................................... 70
6 -4.200sp|P57740|NU107_HUMAN Nuclear pore complex protein Nup107 OS=Homo sapiens GN=NUP107 PE=1 SV=1  ali   15  1......................................................................................................................................................................................................................................................................................................................QVIPRTPSSFRQPFSRSLLRQPDISCILGTGG--KSPRLTQSSGFFGNLSMVTNLDDSNWAAAFSSQRSGLFTNTEPHSITEDVTISAVMLR............................................................................................................................................................................................................................................ 93
7 -4.100sp|O00592|PODXL_HUMAN Podocalyxin OS=Homo sapiens GN=PODXL PE=1 SV=2  ali   38  57................................................................................................................................................................AGLELLTSGDLPTLASQSAGI......................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 77
8 -3.960sp|Q96MT7|WDR52_HUMAN WD repeat-containing protein 52 OS=Homo sapiens GN=WDR52 PE=1 SV=1  ali   7  4...........................................................................................................EIFIPSTPSPILCGFYSEPGKFWVSLGGYDSGFLYHCEFPPCDESSDFKEQKDEPIDVRYLADTEDNPIQTITFNI---NKVMMFCGMKNGAIRVYVLNQNDPSLTSLVDYWHFN-DNNYG.......................................................................................................................................................................................................................................................................................................................................................................................................................... 122
9 -3.880sp|Q9NPR9|GP108_HUMAN Protein GPR108 OS=Homo sapiens GN=GPR108 PE=2 SV=3  ali   7  4...................................................................................................................................................SERRGLGRGSPAEWGQRLLLVLLLGGCSGRIHQLATGEKRADIQLNSFGNGSLEVELSVLR-------LGLREAEEKSLLVGFSLSRVRSGRVRSYSTRDFQDCPLQKNSSSFLVLFLINTKDLQVQVRKYGEQKTLFIFPG............................................................................................................................................................................................................................................................................................................................................................. 142
10 -3.780sp|Q6ZUF6|NC336_HUMAN Putative uncharacterized protein encoded by LINC00336 OS=Homo sapiens GN=LINC00336 PE=2 SV=1  ali   28  11................................................................................................................................................................AFLKLLSSSNPPTSASESARI......................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 31
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 8 6 9   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Liu T, Rojas A, Ye Y, Godzik A. Homology modeling provides insights into the binding mode of the PAAD/DAPIN/pyrin domain, a fourth member of the CARD/DD/DED domain family. Protein Sci. 2003 Sep;12(9):1872-81.