current user: public
If you have questions about the server, please let us know.

Query: gi|16759000|ref|NP_454617.1| transaldolase B (STY0007) [Salmonella enterica subsp. enterica serovar Typhi str. CT18], from S.typhi

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    .  260    .  270    .  280    .  290    .  300    .  310    .
# Score Template Links and tools%idFirst MTDKLTSLRQFTTVVADTGDIAAMKLYQPQDATTNPSLILNAAQIPEYRKLIDDAVAWAKQQSSDRAQQVVDATDKLAVNIGLEILKLVPGRISTEVDARLSYDTEASIAKAKRIIKLYNDAGISNDRILIKLASTWQGIRAAEQLEKEGINCNLTLLFSFAQARACAEAGVYLISPFVGRILDWYKANTDKKDYAPAEDPGVVSVTEIYEYYKQHGYETVVMGASFRNVGEILELAGCDRLTIAPALLKELAESEGAIERKLSFSGEVKARPERITEAEFLWQHHQDPMAVDKLADGIRKFAVDQEKLEKMIGDLLLast
1 -102.0003cwn_A mol:protein length:337 Transaldolase B  ali model follow..  94  15MTDKLTSLRQYTTVVADTGDIAAMKLYQPQDATTNPSLILNAAQIPEYRKLIDDAVAWAKQQSNDRAQQIVDATDKLAVNIGLEILKLVPGRISTEVDARLSYDTEASIAKAKRLIKLYNDAGISNDRILIKLASTWQGIRAAEQLEKEGINCNLTLLFSFAQARACAEAGVFLISPYVGRILDWYKANTDKKEYAPAEDPGVVSVSEIYQYYKEHGYETVVMGASFRNIGEILELAGCDRLTIAPTLLKELAESEGAIERKLSYTGEVKARPARITESEFLWQHNQDPMAVDKLAEGIRKFAIDQEKLEKMIGDLL 331
2 -99.1003m16_A mol:protein length:329 Transaldolase  ali model follow..  61  6AKNKLEALKAMTTVVADTGDIEAIKQFKPVDATTNPSLILKAAKLANYQHLIEEAIDWALQIKGNDKNSQTNVGDKLAVNIGCEVLTSIPGVISTEVDARLSFDTQATVAKARKLIRLYQDAGIDSDRILIKIASTWEGIQAAKILEAEGIHCNLTLLFHFAQAQACAEAGTTLISPFVGRILDWYKANSGQSEYSASEDPGVVSVTEIYNFYKSHGFKTIVMGASFRNTGEIEELAGCDRLTISPELLAQLEADTSPLEQKLFPIKETKDTPELLTEASFRWAMNNDPMAHDKLADGIRRFAADQVTLESMLSKKI 325
3 -97.4003hjz_A mol:protein length:334 Transaldolase B  ali model follow..  52  2MKSILEQLSSMTVVVADTGDLDSIKKFQPRDATTNPSLILAAAKNPDYVKLIDKAIESSENTLPNGFELIKETVDQVSVFFGKEILKIISGRVSTEVDARLSFDTEATVKKARKLINLYKNFGIEKERILIKIAATWEGIKAAEILEKEGIKCNLTLLFNFCQAVTCANANITLISPFVGRILDWHKAKTGKTSFIGAEDPGVISVTQIYKYFKEKGFKTEVMGASFRNLDEIKELAGCDLLTIAPKFLEELKREKGVLIRKLDASTKINNSIDKFEEKDFRLSMLEDQMASEKLSEGITGFSKAIEELEELLIERL 322
4 -97.3001f05_A mol:protein length:337 TRANSALDOLASE  ali model follow..  60  11MESALDQLKQFTTVVADTGDFHAIDEYKPQDATTNPSLILAAAQMPAYQELVEEAIAYGRKLGGSQEDQIKNAIDKLFVLFGAEILKKIPGRVSTEVDARLSFDKDAMVARARRLIELYKEAGISKDRILIKLSSTWEGIQAGKELEEQGIHCNMTLLFSFAQAVACAEAGVTLISPFVGRILDWHVANTDKKSYEPLEDPGVKSVTKIYNYYKKFSYKTIVMGASFRNTGEIKALAGCDFLTISPKLLGELLQDNAKLVPVLSAKAAQASDLEKIDEKSFRWLHNEDQMAVEKLSDGIRKFAADAVKLERMLTERM 330
5 -97.2002cwn_A mol:protein length:332 Transaldolase  ali model follow..  59  6SGSALDQLKQFTTVVADTGDFNAIDEYKPQDATTNPSLILAAAQMPAYQELVEEAIAYGKKLGGPQEEQIKNAIDKLFVLFGAEILKKIPGRVSTEVDARLSFDKDAMVARARRLIELYKEAGVGKDRILIKLSSTWEGIQAGKELEQHGIHCNMTLLFSFAQAVACAEAGVTLISPFVGRILDWHVANTDKKSYEPQGDPGVKSVTKIYNYYKKFGYKTIVMGASFRNTGEIKALAGCDFLTISPKLLGELLKDNSKLAPALSVKAAQTSDSEKIDEKAFRWLHNEDQMAVEKLSDGIRKFAADAIKLERMLTERM 325
6 -97.0003te9_A mol:protein length:345 Transaldolase  ali model follow..  48  20QKSVLEQLKQVTMVVADTGDFELIKKYKPVDATTNPSLILKAVKEQKYSNLVAETISKVKANNPDSDDLVKEIAIEILVSFGIKILDVIEGKVSSEVDARVSFNSATTIDYAKRIIARYESNGIPKDRVLIMIAATWEGIKAAKLLQKEGINCNLTLIFDKAQAKACAEAGVYLVSPFVGRITDWQMQQNNLKTFPAIDDDGVNSVKAIYKLYKSHGFKTIVMGASFRNVEQVIALAGCDALTISPVLLEELKNRDEHLEVKLTKNDDVVTQSPQISEADFRWLMNENAMATHKLAEGIRLFTKDTIELENIIKQNL 339
7 -92.8003cq0_A mol:protein length:339 Putative transaldolase YGR043C  ali model follow..  51  12ATSSLEQLKKATHVVADSGDFEAISKYEPQDSTTNPSLILAASKLEKYARFIDAAVEYGRKHGKTDHEKIENAMDKILVEFGTQILKVVPGRVSTEVDARLSFDKKATVKKALHIIKLYKDAGVPKERVLIKIASTWEGIQAARELEKHGIHCNMTLLFSFTQAVACAEANVTLISPFVGRIMDFYKALSGKDY-TAETDPGVLSVKKIYSYYKRHGYATEVMAASFRNLDELKALAGIDNMTLPLNLLEQLYESTDPIENKLNSESAKEEGVEKVSEPHFRYVLNEDQMATEKLSDGIRKFSADIEALYKLVEEKM 333
8 -76.4003clm_A mol:protein length:352 Transaldolase  ali model follow..  19  2M-TILSDVDNLSRSLVQSGELAQMLKQGVCGVTSNPAIFQKAFAGDALYADEVAALKRQNLSPKQRYETMAVADVRAACDVEHESTGGKTGFVSLEVSPELAKDAQGTVEEARRLHA-----AIARKNAMIKVPATDAGIDALETLVSDGISVNLTLLFSRAQTLKAYAAYARGIAKRLAAGQSVAHIQVVASFFISRVDSALDLEAQGANRVQLLWASTGVKNPAYPDTLYVDSLIGVHTVNTVPDATLKAFIDHGTAKATLTESAD---EARARLAEIAALGIDVETLAARLQEDGLKQFEEAFEKLLAPL.... 351
9 -72.8003r5e_A mol:protein length:360 Transaldolase  ali model follow..  20  1M-SHIDDLAQLTSTWLDDLSRERIEEKSVVGVTTNPAIFAAAMSKGDSYDAQIAELKAAGASVDQAVYAMSIDDVRNACDLIFESSNGYDGRVSIEVDPRISADRDATLAQAKELWAK-----VDRPNVMIKIPATPGSLPAITDALAEGISVNVTLIFSVARYREVIAAFIEGIKQAAANGHDVSKIHSVASFFVSRVDAGVANAQRAYAVYKELWASTGVKNPAYAATLYVSELAGPNTVNTMPEGTIDAVLEQGNLHG--DTLSNSAAEADAVFSQLEALGVDLADVFQVLETEGVDKFVASWSELLESMEARL 359
10 -60.1001wx0_A mol:protein length:223 transaldolase  ali model follow..  29  1...........MELYLDTASLEEIREI-LSGVTTNPTLVAKAFAAKGEA-----------------------LTEEAFAAHLRAICETVGGPVSAEV---TALEAEAMVAEGRRLAAI-------HPNIVVKLPTTEEGLKACKRLSAEGIKVNMTLIFSANQALLAARAGASYVSPFLGRVDDI-------------SWDGGELLREIVEMIQVQDLPVKVIAASIRHPRHVTEALGADIATMPHAVFKQLLKHP-------------------------------------LTDIGLKRFLEDWEKVKP...... 223
11 -58.1003s0c_A mol:protein length:223 Probable transaldolase  ali model follow..  32  1...........MKIFLDTANIDEIRTG-VDGVTTNPTLISKEAVNGKK-----------------------------YGDIIREILKIVDGPVSVEV---VSTKYEGMVEEARKIHGL-------GDNAVVKIPMTEDGLRAIKTLSSEHINTNCTLVFNPIQALLAAKAGVTYVSPFVGRLDDI-------------GEDGMQIIDMIRTIFNNYIIKTQILVASIRNPIHVLRSIGADVVTVPFNVLKSLMKHP-------------------------------------KTDEGLAKFLEDWKKVSPDGKLIL 223
12 -57.7003r8r_A mol:protein length:212 Transaldolase  ali model follow..  28  1...........MLFFVDTANIDEIREA-LAGVTTNPSLVAKEANVS-------------------------------FHDRLREITDVVKGSVSAEVISL---KAEEMIEEGKELAKI-------APNITVKIPMTSDGLKAVRALTDLGIKTNVTLIFNANQALLAARAGATYVSPFLGRLDDI-------------GHNGLDLISEVKQIFDIHGLDTQIIAASIRHPQHVTEARGAHIGTMPLKVIHALTKHP-------------------------------------LTDKGIEQFLADWNK......... 212
13 -57.6004rxf_A mol:protein length:226 Fructose-6-phosphate aldolase 1  ali model follow..  25  1...........MELYLDTSDVVAVKAL-LAGVTTNPSIIAAGKKPLDVVLPQLHEAM------------------------------GGQGRLFAQVMAT---TAEGMVNDALKLRSI-------IADIVVKVPVTAEGLAAIKMLKAEGIPTLGTAVYGAAQGLLSALAGAEYVAPFVNRIDAQ-------------GGSGIQTVTDLHQLLKMHAPQAKVLAASFKTPRQALDCAGCESITLPLDVAQQMISYP-------------------------------------AVDAAVAKFEQDWQGAFG...... 216
14 -57.5001vpx_A mol:protein length:230 PROTEIN (Transaldolase (EC 2.2.1.2))  ali model follow..  33  4........DKIMKIFLDTANLEEIKKG-VDGVTTNPTLISKE--------------------------------GAEFKQRVKEICDLVKGPVSAEV---VSLDYEGMVREARELAQI-------SEYVVIKIPMTPDGIKAVKTLSAEGIKTNVTLVFSPAQAILAAKAGATYVSPFVGRMDDL-------------SNDGMRMLGEIVEIYNNYGFETEIIAASIRHPMHVVEAAGVDIVTMPFAVLEKLFKHPMT-------------------------------------DLGIERFMEDWKKYLENLKK.. 224
15 -55.8004rxg_A mol:protein length:220 Fructose-6-phosphate aldolase 1  ali model follow..  24  1...........MELYLDTSDVVAVKAL-LAGVTTNPSIIAAGKKPLDVVLPQLHEAMGG------------------------------QGRLFAEV---MATTAEGMVNDALKLRSI-------IADIVVKVPVTAEGLAAIKMLKAEGIPTLGTAVYGAAQGLLSALAGAEYVAPYVNRIDAQGG-------------SGIQTVTDLHQLLKMHAPQAKVLAASFKTPRQALDCAGCESITLPLDVAQQMISYPAV-------------------------------------DAAVAKFEQDWQGA........ 214
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 9 4 0   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Jaroszewski L, Godzik A. Tolerating some redundancy significantly speeds up clustering of large protein databases. Bioinformatics. 2002 Jan;18(1):77-82.