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Query: gi|16759006|ref|NP_454623.1| chaperone protein DnaJ (STY0013) [Salmonella enterica subsp. enterica serovar Typhi str. CT18], from S.typhi

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MAKRDYYEILGVSKTAEEREIKKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDAQKRAAYDQYGHAAFEQGGMGGGFGGGFNGGADFSDIFGDVFGDIFGGGRGRQRAARGADLRYNMDLTLEEAVRGVTKEIRIPTLEECDVCHGSGAKAGTQPQTCPTCHGSGQVQMRQGFFAVQQTCPHCQGRGTLIKDPCHKCHGHGRVEKSKTLSVKIPAGVDTGDRIRLAGEGEAGEHGAPAGDLYVQVQVKQHPIFEREGNNLYCEVPINFAMAALGGEIEVPTLDGRVMLKVPSETQTGKLFRMRGKGVKSVRGGAQGDLLCRVVVETPVGLSEKQKQLLKDLQESFGGPTGEKNSPRSKSFFDGVKKFFDDLTRLast
1 -96.1003lz8_A mol:protein length:329 Putative chaperone DnaJ  ali model follow..  40  19MELKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKEN-DAEAKFKDLAEAWEVLKDEQRRAEYDQLWQHRNDPGGRQRQTHEQSYSQQDFDDIFSSMFGQ-QAHQRRRQHAARGHDLEIEVAVFLEETLAEQTRTISYNL-------------------------------------------------------PVYNVFGMIESETPKTLNVKIPAGVVDGQRIRLKGQGTPGENGGPNGDLWLVIHIAPHPLFDIVGHNLEIVLPLAPWEAALGAKVTVPTLKESILLTVPPGSQAGQRLRIKGKGLV--SKTHTGDLFAVIKIVMPTKPDEKARELWQQLAAAEASFDPRKT.................... 319
2 -83.8004j80_A mol:protein length:284 Chaperone protein DnaJ 2  ali model follow..  40  3.AKKDYYAILGVPRNATQEEIKRAYKRLARQYHPDVNK-SPEAEEKFKEINEAYAVMSDPEKRRIYDTYGTTEAPPPPPPGGYDFSGFDVEDFSEFFQELFGP--------GLFGKGRDLRAELPLTLEEAFHGGERVVEVA---------------------------------------------------------------------GRRVSVRMPPGVREGSVIRVPGMGG---QGNPPGDLLLVVRMLPHPVFRLEGQDLYATLDVPAPIAVVGGKVRAMTLEGPVEVAVPPRTQAGRKMRLKGGGFP--GPAGRGDLYLEVRITIPERLTPEEEALWKKLAEAYYARA........................ 273
3 -68.1001nlt_A mol:protein length:248 Mitochondrial protein import protein MAS5  ali model follow..  26  1..........................................................................................................GAQRPRGPQRGKDIKHEISASLEELYKGRTAKLALNKQILCKECEGRGGKKGA-VKKCTSCNGQGIKFVTRMIQRFQTECDVCHGTGDIIKDRCKSCNGKKVENERKILEVHVEPGMKDGQRIVFKGEADQAP-DVIPGDVVFIVSERPHKSFKRDGDDLVYEAEIDLLTAIAGGEFALEHVSGDLKVGIVPGIAPGMRKVIEGKGMPIPKYGGYGNLIIKFTIKDPENHFTSEENLKK.................................. 246
4 -61.4005y88_T mol:protein length:283 Pre-mRNA-splicing factor CWC23  ali model follow..  13  12.QRLNLYDVLELPTPLDVPQIKRKYRTLALKYHPDKHPDNPSIIHKFHLLSTATNILTNADVRPHYDRWLIEFLRKTNDIERNKL----IQKLEESESSTIPTTTPHPDLLQIQRHGELLRKHFNLPYGDWKHLNTQDQENASQHPYYDCSTLRIV---------------------------------------LDNFLQSNNKSN-CLSHLRNQVFITLSANEIYDIYFSERNNYSKDDSIIIYTVFDTPITAQHVFRNWSSGN-------LIPTVKDISPLIPLHYYDFNLETELNDDIARLVS........................................................................ 276
5 -53.6003apq_A mol:protein length:210 DnaJ homolog subfamily C member 10  ali model follow..  28  2...QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGLEDNQGGQYESWSYDDDPEIITLERREFDAAVNSGEL-NFYSPGCSHCHDLAPTWREFAKEVDGLLRIGAVDDRMLCRMKGVN--SYPSLFIFRSGMAAVKYN........................................................................................................................................................................................................... 185
6 -52.8004j7z_A mol:protein length:113 Chaperone protein DnaJ 2  ali model follow..  49  1AAKKDYYAILGVPRNATQEEIKRAYKRLARQYHPDVNK-SPEAEEKFKEINEAYAVLSDPEKRRIYDTYGTTEAPPPPPPGGYDFSGFDVEDFSEFFQELFGPGLFGGFGRRSR......................................................................................................................................................................................................................................................................... 113
7 -52.7002q2g_A mol:protein length:180 Heat shock 40 kDa protein, putative (fragment)  ali model follow..  24  13.......................................................................................................................................................................................TLEELYLGKRKKIKVTRKRFIEHKVRNEENIVEVEIKPGWKDGTKLTYSGEGDQESPGTSPGDLVLIIQTKTHPRFTRDDCHLIMKVTIPLVRALTGFTCPVTTLDNRLQIPIKEIVNPKTRKIVPNEGMPIKNQPGKGDLILEFDICFPKSLTPEQKKLIKEALD.............................. 180
8 -52.4005nro_B mol:protein length:108 Chaperone protein DnaJ  ali model follow..  93  1MAKQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAAFEQGGMGGG---GFGGGADFSDIFGDVFGDIFGGGSSH............................................................................................................................................................................................................................................................................ 108
9 -51.5001xbl_A mol:protein length:107 DNAJ  ali model follow..  96  1.AKQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAAFEQGGMGGG---GFGGGADFSDIFGDVFGDIFGGGRGR............................................................................................................................................................................................................................................................................ 107
10 -49.0002b26_A mol:protein length:173 SIS1 protein  ali model follow..  21  9......................................................................................................................................................................................VSLEDLFVGKKKSFKIGRKGPHGAS---EKTQIDIQLKPGWKAGTKITYKNQGDYNPQTGRRKTLQFVIQEKSHPNFKRDGDDLIYTLPLSFKESLLGFSKTIQTIDGRLPLSRVQPVQPSQTSTYPGQGMPTPKNPSRGNLIVKYKVDYPISLNDAQKRAIDEN................................ 172
11 -47.9002ctw_A mol:protein length:109 DnaJ homolog subfamily C member 5  ali model follow..  38  14TSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRNIYDKYGSLGLYVAEQFG--------EENVNTYFVSGPSSG................................................................................................................................................................................................................................................................................... 109
12 -47.6003agz_A mol:protein length:190 DnaJ homolog subfamily B member 1  ali model follow..  20  1.......................................................................................................................................................................SAQEPARKKQDHDLRVSLEEIYSGCTKKMKHKRLNPDGKSIRNEDKILTIEVKKGWKEGTKITFPKEGDQTS-NNIPADIVFVLKDKPHNIFKRDGSDVIYPARISLREALCGCTVNVPTLDGRIPVVFKDVIRPGMRRKVPGEGLPLPKTPERGDLIIEFEVIFPERIPQTSRTVLEQVLPI............................. 190
13 -46.7002n04_A mol:protein length:105 DnaJ homolog subfamily C member 5  ali model follow..  41  16TSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRNIYDKYGSLGLYVAEQFG--------EENVNTYF.......................................................................................................................................................................................................................................................................................... 104
14 -46.2002yua_A mol:protein length:99 Williams-Beuren syndrome chromosome region 18 protein  ali model follow..  39  14YSRTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRKYDRGLLSDEDLRGPGSGPSSG..................................................................................................................................................................................................................................................................................................... 99
15 -46.1002ctq_A mol:protein length:112 DnaJ homolog subfamily C member 12  ali model follow..  22  17EDTEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRARYDHWRRSQMSMPFQQ---------WEALNDSVKTSGPSSG.................................................................................................................................................................................................................................................................................. 112
16 -45.9002ctt_A mol:protein length:104 DnaJ homolog subfamily A member 3  ali model follow..  35  1....................................................................................................................GSSGSSGMELTFNQAAKGVNKEFTVNIMDTCERCNGKGNEPGTKVQHCHYCGGSGMETINTGPFVMRSTCRRCGGRGSIIISPCVVCRGAGQAKQKKR--SGPSSG............................................................................................................................................................. 104
17 -44.6002dn9_A mol:protein length:79 DnaJ homolog subfamily A member 3  ali model follow..  51  4GSSGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRKQYDAYGSGPSSG............................................................................................................................................................................................................................................................................................................... 79
18 -44.5002lgw_A mol:protein length:99 DnaJ homolog subfamily B member 2  ali model follow..  44  2...ASYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEAEKKFKEVAEAYEVLSDKHKREIYDRYGREGLTGTGTGPSRAE----AGSGGPGLE......................................................................................................................................................................................................................................................................................... 93
19 -44.4002ctr_A mol:protein length:88 DnaJ homolog subfamily B member 9  ali model follow..  55  4GSSGSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNK-SPDAEAKFREIAEAYETLSDANRRKEYDTLGHSAFTSGKGQSGPSSG..................................................................................................................................................................................................................................................................................................... 88
20 -43.7002dmx_A mol:protein length:92 DnaJ homolog subfamily B member 8  ali model follow..  47  6SGMANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEAEKKFKLVSEAYEVLSDSKKRSLYDRAGCDSWRAGGGASGPSSG..................................................................................................................................................................................................................................................................................................... 92
21 -43.6002cug_A mol:protein length:88 mKIAA0962 protein  ali model follow..  46  14ALDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNK-DPGAEDRFIQISKAYEILSNEEKRTNYDHYGSGPSSG............................................................................................................................................................................................................................................................................................................... 88
22 -42.9002l6l_A mol:protein length:155 DnaJ homolog subfamily C member 24  ali model follow..  23  7MPKKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDEECVQKFIEIDQAWKILGNEETKREYDLQRCEDDLRNVGPVDAQVYLEEMSWNEGDHSFYLSCRCGGK--------------------------SKDEAEEVSLISCDTCS.................................................................................................................................................................................................................................... 140
23 -42.3002qsa_A mol:protein length:109 DnaJ homolog dnj-2  ali model follow..  29  12CGLENCYDVLEVNREEDKQKLAKAYRALARKHHPDRVKNKEEAEERFRVIATAYETLKDDEAKTNYDYYLDHPDQRFYNYYQYYRLR--AAPKVDL........................................................................................................................................................................................................................................................................................... 109
24 -42.2004rwu_A mol:protein length:92 Protein SIS1  ali model follow..  50  5VKETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGD---TEKFKEISEAFEILNDPQKREIYDQYGLEAARSGGPSFGPGGPGGAGG................................................................................................................................................................................................................................................................................................ 92
25 -41.4002ej7_A mol:protein length:82 HCG3 gene  ali model follow..  52  7.GMVDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEAERRFKQVAEAYEVLSDAKKRDIYDRYGSGPSSG............................................................................................................................................................................................................................................................................................................... 82
26 -41.1002ctp_A mol:protein length:78 DnaJ homolog subfamily B member 12  ali model follow..  48  5.SSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNH-APGATEAFKAIGTAYAVLSNPEKRKQYDQFGSGPSSG............................................................................................................................................................................................................................................................................................................... 78
27 -41.1001wjz_A mol:protein length:94 1700030A21Rik protein  ali model follow..  32  14.LKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADEECMQKFIEIDQAWKILGNEETKKKYDLQRSGPSSG............................................................................................................................................................................................................................................................................................................... 94
28 -41.1001hdj_A mol:protein length:77 HUMAN HSP40  ali model follow..  48  2..GKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNK-EPGAEEKFKEIAEAYDVLSDPRKREIFDRYGEEGLKGSGC............................................................................................................................................................................................................................................................................................................ 77
29 -40.8003ucs_C mol:protein length:74 Curved DNA-binding protein  ali model follow..  52  3.ELKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSK-EPDAEARFKEVAEAWEVLSDEQRRAEYDQMWQH................................................................................................................................................................................................................................................................................................................... 72
30 -40.5005vso_A mol:protein length:75 Yeast dnaJ protein 1  ali model follow..  53  7VKETKFYDILGVPVTATDVEIKKAYRKCALKYHPDKNPSE-EAAEKFKEASAAYEILSDPEKRDIYDQFG..................................................................................................................................................................................................................................................................................................................... 75
31 -39.6002och_A mol:protein length:73 Hypothetical protein dnj-12  ali model follow..  46  5VKETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNP---DGAEQFKQISQAYEVLSDEKKRQIYDQGGEE................................................................................................................................................................................................................................................................................................................... 73
32 -38.5002lo1_A mol:protein length:71 DnaJ homolog subfamily A member 1  ali model follow..  50  3VKETTYYDVLGVKPNATQEELKKAYRKLALKYHPDKNPNE---GEKFKQISQAYEVLSDAKKRELYDKGGEQ................................................................................................................................................................................................................................................................................................................... 71
33 -37.2002m6y_A mol:protein length:77 DnaJ homolog subfamily A member 1  ali model follow..  52  6VKETTYYDVLGVKPNATQEELKKAYRKLALKYHPDKNPNE---GEKFKQISQAYEVLSDAKKRELYDK....................................................................................................................................................................................................................................................................................................................... 70
34 -36.7001exk_A mol:protein length:79 DNAJ PROTEIN  ali model follow..  96  1.....................................................................................................................................GVTKEIRIPTLEECDVCHGSGAKPGTQPQTCPTCHGSGQVQMRQGFFAVQQTCPHCQGRGTLIKDPCNKCHGHGRVERS....................................................................................................................................................................... 79
35 -36.6003i38_A mol:protein length:109 Putative chaperone DnaJ  ali model follow..  31  2.............................................................................................................................................................................................................................................................NAHPLFDIVGHNLEIVLPLAPWEAALGAKVTVPTLKESILLTVPPGSQAGQRLRIKGKGLV--SKTHTGDLFAVIKIVMPTKPDEKARELWQQLAAAEASFDPRKT.................... 105
36 -36.6002ys8_A mol:protein length:90 Rab-related GTP-binding protein RabJ  ali model follow..  30  24RNSKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCV-APGSEDAFKAVVNARTALLKNIKSGPSS........................................................................................................................................................................................................................................................................................................................ 89
37 -36.0001gh6_A mol:protein length:114 Large T antigen  ali model follow..  18  6.ESLQLMDLLGLERSAWGNLMRKAYLKKCKEFHPDKGG----DEEKMKKMNTLYKKMEDGVKYAHQPDFGGFWDATEIPTYGTDEWEQWWNAFENLFCSEEMPSSDDEAT............................................................................................................................................................................................................................................................................. 114
38 -31.6002pf4_E mol:protein length:174 Small T antigen  ali model follow..  16  9.ESLQLMDLLGLERSAWGNLMRKAYLKKCKEFHPDKGG----DEEKMKKMNTLYKKMEDGVKYAHQPDFGGFWDATEVFASSLNP------GVDAIYCKQWPECVKKMSTNCI--------LCLLRMKHENRKLYRKDPLVWVDCYCFDC..................................................................................................................................................................................................................................... 143
39 -29.9001faf_A mol:protein length:79 LARGE T ANTIGEN  ali model follow..  17  9.DKERLLELLKLPRQGDFGRMQQAYKQQSLLLHPDKGGS----HALMQELNSLWGTFKTEVYNLRMNLGGTG................................................................................................................................................................................................................................................................................................................... 77
40 -29.3001iur_A mol:protein length:88 KIAA0730 protein  ali model follow..  27  8.ILKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDANEVFKHLQNEINRL---EKQAFLDQNADRASRRT.............................................................................................................................................................................................................................................................................................................. 81
41 -29.3006ekb_A mol:protein length:81 DnaJ/Hsp40 cysteine-rich domain superfamily protein  ali model follow..  22  1..................................................................................................................................MAANNNPQGTKPNSLVCANCEGEGCV------ACSQCKGGGVNLIDHGQFKAGALCWLCRGKKEVL---CGDCNGAGFIGGFLSTFDE................................................................................................................................................................. 81
42 -26.1004mo1_A mol:protein length:178 Antitermination protein Q  ali model follow..  16  12................................................................................................MAAFCGKHELSQNDKQKAINQFAHKVSGKYRGVAKLEGNTKAKVLQVLATFAYADYCRSA-ATPGARCRDCHGTGRAVDIAWGRVVEKECGRCKGVGYSRMPASAAYRAVTMLITQPTWSRTVKPLYDALVVQCHKEESIA.............................................................................................................................................. 161
43 -24.0001xao_A mol:protein length:121 Mitochondrial protein import protein MAS5  ali model follow..  21  2..................................................................................................................................................................................................................................................................FKRDGDDLVYEAEIDLLTAIAGGEFALEHVSGDLKVGIVPGIAPGMRKVIEGKGMPIPKYGGYGNLIIKFTIKFPENTSEENLKKLEEILPPRIVPAIPKKATVDECVLADF......... 118
44 -21.3002guz_A mol:protein length:71 Mitochondrial import inner membrane translocase subunit TIM14  ali model follow..  18  11MNSKEALQILNLTENLTKKKLKEVHRKIMLANHPDKG----GSPFLATKINEAKDFLEKRGISK........................................................................................................................................................................................................................................................................................................................... 71
45 -21.3001n4c_A mol:protein length:182 Auxilin  ali model follow..  21  115.AGETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYAKMIFMELNDAWSEFENQGQKPLY......................................................................................................................................................................................................................................................................................................................... 182
46 -20.2003uo2_A mol:protein length:175 J-type co-chaperone JAC1, mitochondrial  ali model follow..  21  2..TSTFYELFPKTFPKDQSRLRKEYRQLQAQHHPDMA---QQGSEQSSTLNQAYHTLKDPLRRSQY......................................................................................................................................................................................................................................................................................................................... 69
47 -19.5002bx9_A mol:protein length:53 TRYPTOPHAN RNA-BINDING ATTENUATOR PROTEIN-INHIBITORY PROTEIN  ali model follow..  25  1..............................................................................................................................................................................MVIATDDLEVACPKCERAGEIEGTPCPACSGKGVILTAQTLLDFIQKHLNK.......................................................................................................................................................... 53
48 -17.4002guz_B mol:protein length:65 Mitochondrial import inner membrane translocase subunit TIM16  ali model follow..  12  1MTLDESCKILNIEEDLNMDKINNRFNYLFEVNDKEKG----GSFYLQSKVYRAAERLKWELAQRE.......................................................................................................................................................................................................................................................................................................................... 64
49 -16.7003lcz_A mol:protein length:53 Inhibitor of TRAP, regulated by T-BOX (Trp) sequence RtpA  ali model follow..  27  1..............................................................................................................................................................................MVIATDDLETTCPNCNGSGREEPEPCPKCLGKGVILTAQGSTL-IKKHIHE.......................................................................................................................................................... 53
50 -16.0004it5_A mol:protein length:174 Co-chaperone protein HscB homolog  ali model follow..  24  2.NAMNYFELFGLPIELDGSLLSSQFRALQKRFHPDNFATASERDRLMAVINDAYQTLKDPLRRAEY......................................................................................................................................................................................................................................................................................................................... 73
51 -15.7001fpo_A mol:protein length:171 CHAPERONE PROTEIN HSCB  ali model follow..  25  2....DYFTLFGLPAQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVINQAWQTLRHPLMRAEY......................................................................................................................................................................................................................................................................................................................... 70
52 -15.7003uo3_A mol:protein length:181 J-type co-chaperone JAC1, mitochondrial  ali model follow..  23  9.FTSTFYELFPKTFTIDQSRLRKEYRQLQAQHHPDM----QQGSEQSSTLNQAYHTLKDPLRRSQY......................................................................................................................................................................................................................................................................................................................... 77
53 -13.7003bvo_A mol:protein length:207 Co-chaperone protein HscB, mitochondrial precursor  ali model follow..  24  41.PTRDYFSLMDCNRRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEVNDAYKTLLAPLSRGLY......................................................................................................................................................................................................................................................................................................................... 112
54 -13.0003cao_A mol:protein length:103 CYTOCHROME C3  ali model follow..  21  8......................................................................................................................PTDAFGKLERPAAVFNHDEHNEKAGIESCNACHHV-EDEDSVGTPCSDCHALEQDGDTPGL-AYHQQCWGCHEKQAKGPVMCGECHVK............................................................................................................................................................................. 102
55 -12.5002k3v_A mol:protein length:86 Tetraheme cytochrome c-type  ali model follow..  27  14.................................................................................................................................................GCENCHADGEPSKDGAEQCQSCHGSAEMDDNHKPHDGLLMCADCHEAKVGEKPTCDTCHDDGRTAK........................................................................................................................................................................ 86
56 -12.4001m1p_A mol:protein length:91 Small tetraheme cytochrome c  ali model follow..  24  14.................................................................................................................................................GCESCHKDGTPSADGAAQCQSCHGKSEMDAVHKPHDGNLVCADCHDMNVGQKPTCESCHDDGRTS......................................................................................................................................................................... 85
57 -12.3001ofw_A mol:protein length:296 NINE-HEME CYTOCHROME C  ali model follow..  19  220.............................................................................................................................................KPEILCATCHHR-SPLSLTPPKCGSCHTKEIDKANPGR-AYHLQCMGCHKGARPRDTDCTTCHKAAPKSAD....................................................................................................................................................................... 296
58 -12.10019hc_A mol:protein length:292 PROTEIN (NINE-HAEM CYTOCHROME C)  ali model follow..  21  220.............................................................................................................................................KPEILCATCHHR-SPLSLTPPKCGSCHTKEIDAADPGR-AYHLECMGCHKGARPRDTDCTTCHKA............................................................................................................................................................................. 290
59 -11.9001duw_A mol:protein length:292 NONAHEME CYTOCHROME C  ali model follow..  21  220.............................................................................................................................................KPETLCATCH-HRSPLSATPPKCGSCHTKEIDPANPNR-AYHLQCMGCHQGGRPKNTDCTTCHKA............................................................................................................................................................................. 290
60 -11.6003cyr_A mol:protein length:107 CYTOCHROME C3  ali model follow..  17  1.....................................................................................................................APAVPNKPVEVKGSQKTVMFPHAPHEKVECVTCHHLVDGKESAKCGSSGCHDDLTAKKGEKSLLKHTSCLACHSKKDLTGCAKSKCH............................................................................................................................................................................... 106
61 -11.6001gyo_A mol:protein length:109 CYTOCHROME C3, A DIMERIC CLASS III C-TYPE CYTOCHROME  ali model follow..  14  6........................................................................................................................KVVITAPEGEDPHPRFGKVEMSHAKSCVSCHHM-FDGCGDFQKCADCHIDRDDRSYERGFYKAISCRGCHKAMKAKNEQLQGCHEAAQ........................................................................................................................................................................... 108
62 -11.4001qn0_A mol:protein length:112 CYTOCHROME C3  ali model follow..  15  2......................................................................................................................DVPADGAKIDFIAGGEKNLTVVFNHSTKCDDCHHQPGDKQYAGCTTDGCHNILDKADKS---GAKPTCISCHKDKAGDDKEGSACHPS............................................................................................................................................................................. 112
63 -11.4001i77_A mol:protein length:107 CYTOCHROME C3  ali model follow..  18  23...........................................................................................................................................AVHAKVECVTCHHQVDGKESAKCGSSGCHDDLAGKQGEKSLLKHTNCIGCHSK-DLTACAKSKCH............................................................................................................................................................................... 106
64 -11.2002ozy_A mol:protein length:163 Cytochrome c-type protein nrfB  ali model follow..  17  36.................................................................................................................................HGKHASVINPNNKLPVTCTNCHGQPSPVGEQNSVCMSCHLPEQLQKAHDVHVTKVACASCHSSDKGRIKICVDCHSDQRTNPNFNPA----VPLLKEQ........................................................................................................................................................ 162
65 -11.1001z1n_X mol:protein length:560 sixteen heme cytochrome  ali model follow..  24  487.............................................................................................................................................DALTMCSGCH-HNAKPSLNPPKCASCHSKPFQERTANQ-AFHNQCIGCHQE-NPKATDCQGCHKP............................................................................................................................................................................. 556
66 -11.0002lli_A mol:protein length:124 Protein AIR2  ali model follow..  16  2.............................................................................................................................................EAAPKCNNCSQRGSRHCPKAIQCSKCDEVGHYRSQCPHKWKKVQCTLCKSKKHSKER-CYNCGGKGHFGDD....................................................................................................................................................................... 120
67 -10.7002y4t_A mol:protein length:450 DNAJ HOMOLOG SUBFAMILY C MEMBER 3  ali model follow..  50  374.QKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQEKKKAEKKFIDIAAAKEVLSDPEMRKKFDD....................................................................................................................................................................................................................................................................................................................... 443
68 -10.6001aqe_A mol:protein length:111 CYTOCHROME C3  ali model follow..  14  31...........................................................................................................................................ASHMDIACQQCHHTPDTYTIESCMTEGCHDNIKERTEISS-DSEKSCVGCHRELKRQGPSCNSCHVQ............................................................................................................................................................................. 111
69 -10.6002e84_A mol:protein length:556 High-molecular-weight cytochrome c  ali model follow..  14  103.............EDTTAADLKNIYHANCIGCHTEQAKAGKKTGPQDGECRSCHNPKPMASSWKQ-------------------------------------------------------IGLDKSLHFRHVAAKAIAPVNDPQKNCGACHHVYDEAAKKLDSCRACHGDARVEKKPSL-AAHTQCITCHRSADSGPVSCAGCHDPAMQAKFKVVR................................................................................................................................................................... 265
70 -10.5001gm4_A mol:protein length:107 CYTOCHROME C3  ali model follow..  18  23...........................................................................................................................................APHEKVECVTCHHLVDGKESAKCGSSGCHDDLTAKKGEKSLLKHTSCLACHSKKDLTGCAKSKCH............................................................................................................................................................................... 106
71 -10.5002a3m_A mol:protein length:130 COG3005: Nitrate/TMAO reductases, membrane-bound tetraheme cytochrome c subunit  ali model follow..  16  45...........................................................................................................................................SSHSSYQCADCHHPVDGKENAKCATAGCHDVFDKKDKS---TTVATCMSCHLEAAGSDKDKSKCH............................................................................................................................................................................... 129
72 -10.4001w7o_A mol:protein length:118 CYTOCHROME C3  ali model follow..  25  37...........................................................................................................................................SKHATVECAQCHHEADGGAVKKCTTSGCHDSLEFRDKANA-AYHTQCIDCHKALKKDKKPCGKCHTT............................................................................................................................................................................. 117
73 -10.4002cy3_A mol:protein length:118 CYTOCHROME C3  ali model follow..  25  37...........................................................................................................................................TKHATVECVQCHHEADGGAVKKCTTSGCHDSLEFRDKANA-AFHTQCIDCHKALKKDKKPCGKCHTT............................................................................................................................................................................. 117
74 -10.3006f0k_A mol:protein length:211 Cytochrome c family protein  ali model follow..  17  45............................................................................................................................APPYSHRIHVGKLGLD------CRYCHNWVEVSDKPTQTCINCHSQILTDSPR-HVNNGVGCETCHGREPLSMGWCLECHRQPELYLRPQSEIT................................................................................................................................................................. 177
75 -10.2002bq4_A mol:protein length:116 BASIC CYTOCHROME C3  ali model follow..  13  22............................................................................................................................KVKFSHKAHASLGTDAAA----CQKCHHKWDGKSEGGCATEGCHADTTSFKAT---KSPMSCQGCHKEMKTAKKTCAQCH............................................................................................................................................................................... 113
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Pio F, Chu Z, Reed JC, Godzik A. PAAD - a new protein domain associated with apoptosis, cancer and autoimmune diseases. Trends Biochem Sci. 2001 Feb;26(2):85-7.