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Query: gi|16759007|ref|NP_454624.1| putative regulatory protein (STY0014) [Salmonella enterica subsp. enterica serovar Typhi str. CT18], from S.typhi

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MGSKGANKSFDYNLIKILDAVILSGNAAMAAKKLGITPAAVSLALKRLQSYYPEELFSRGKGGLIPTAKAVDIHQNFSQVMKLVDDTFLCNSKKDEAFQITLLGSDIVESYYLSQLYNSDIFDRILINHFSVRNMSREHISELLFTAQGDLLISAEPLLESGIENQIIDSFKSFVCICSSKHMLSTLSQLSLHHFYSSRHALYQPGMGASVIYHDSELFKDELYYTGRRIVGYRSDSLNGLMSMIERTSLIALMPLKLALFYKNHRKYDIKFIQPPPELAFKSVQVYASWKKNSRNISTINEMVSMLQTLSSFRRLast
1 -92.8001utb_A mol:protein length:315 LYSR-TYPE REGULATORY PROTEIN  ali model follow..  19  7..EVMDLRDIDLNLLVVFNQLLLDRSVSTAGEKLGLTQPAVSNSLKRLRTALNDDLFLRTSKGMEPTPYALHLAEPVIYALNTLQTALTTRDSFDPFRTFNLAMTDIGEMYFMPPLMEALAQRAPH-IQISTLRPNAGNLKEDMESGAVDLALGLLPELQTGFFQRRLFR-HRYVCMFRKDHPS-AKSPMSLKQFSELEHVGVVAL-NTGHGEVDGLLERAGI----KRRMRLVVPHFIAIGPILHSTDLIATVPQRFAVRCEV--PFGLTTSPHPAKLP--DIAINLFWHAKYNRDPGNMWLRQLFVELFSE.. 308
2 -88.4002esn_A mol:protein length:310 probable transcriptional regulator  ali model follow..  18  5....PLLRRLDLNLLLVFDALYRHRNVGTAASELAISASAFSHALGRLRQGLDDELFLRQGNRMQPTQRAEHLAAAVAAALRALGEGLEEWRPFVPGRTFVFAATDYTAFALLPPLMNRLQHSAPG-VRLRLVNAERKLSVEALASGRIDFALGYDEELPEGIQAHDWFA-DRYVVVARRDHPR-LAGAPTLEGYLAERHAVVTPW-NEDSGVIDRLLARSGL----RREVAVQLPTVLAALFLAGSTDFLLTAPRHAARALAE--AAGLALYPAPFDIP--PYVLRLYSHVQHVGRDAHAWMIGQLKGLDISRT 309
3 -54.6004rns_A mol:protein length:223 PCP degradation transcriptional activation protein  ali model follow..  16  2.........................................................................................SELRFDPGRNFRIAASDFGQALMLPRLYATLEETAPQ-VRVTGVNLRHGPLVEELESGSIDIAFGGFPTLSAGIKTQTLFR-EEYVCVMRQSHPA-LTHGLDLEAFRQCRHIIVTAEFNHVHEQVEARLLELLP----PESIRFTTENFLVSAVIAEETDVILTIPSRLARWFAN--RGGLTIFPVPIELP--SIEVKQYWHERYDKDPGNIWLRRVIAKIGFQN. 219
4 -54.2003oxn_A mol:protein length:241 Putative transcriptional regulator, LysR family  ali model follow..  15  4.....................................................................................RQLLSPVEFDPQQTFTIATTDYAMQTILPFALPRIYQEAPN-VSFNFLPLQHDRLSDQLTYEGADLAICRPTGPVEPLRSEILGR-VGVLCLLSKQHPLA-NQEMSLDDYLSHPHAMIAIS-DGVKALIEQALIDKP-----QRKMVLRAYHLEAALAIVDTLPIIITVPADLAYLVAE--RYDLVVKPLPFQFT--PFDYSMIWHARCEHSPAQEWLRSVVREECSRL. 222
5 -42.6003fzv_A mol:protein length:306 Probable transcriptional regulator  ali model follow..  15  1......MASYTLRQLKYFVTTVECGSVAEASRKLYIAQPSISTAVKGLEESFGVQLFIRHAQGVSLTPAGARFYRKAQELLRMAHEFEQNALADNDVIQIDIGCFETVAPLYLPGLIAGFRQAYPG-VEIRIRDGEQQELVQGLTSGRFDLAFLYEHDLDSTIETEPLMPPQRPHALLPEGHRFAGQAQVSLRDLCLEPMILLDVQPSR------TYFVSLFEELGLTPNIAFSSPSIEMVRGMVGQGFGFSLLVTRPHSECTYDGK---KVVMVDLAEPVSTSGLAAAWLKRAQLTKPARLFVDYCREQLGK.. 300
6 -41.8003fxq_A mol:protein length:305 LysR type regulator of tsaMBCD  ali model follow..  14  2.........LKLQTLQALICIEEVGSLRAAAQLLHLSQPALSAAIQQLEDELKAPLLVRTKRGVSLTSFGQAFMKHARLIVTESRRAQEEIGQLRGRWHITFAASPAIALAALPLALASFAREFPD-VTVNVRDGMYPAVSPQLRDGTLDFALTAAHDIDTDLEAQPLYV-SDVVIVGQRQHPMANATRLA----LQECRWAFSSAPRGPGAIIRNAFARYGLPEP---KLGLVCESFLALPGVVAHSDLLTTMPRTLYERNAFKD----QLCSIPLQDALPNPTIYVLRRHDLPVTPAAAGLIRWIQHHALQ.. 297
7 -41.7004x6g_A mol:protein length:316 OxyR  ali model follow..  11  1.........MTLTELRYIVTLAQEQHFGRAAERCHVSQPTLSVGVKKLEDELGVLIFERSKSAVRLTPVGEGIVAQAQKVLEQAQGIRELAQAGKNAAPLKVGAIYTIGPYLFPHLIPQLHRVAPQ-MPLYIEENFTHILRDKLRTGELDAIIIALPFQEADVLTKPLFD-EPFYVLMPADHPWTAKASIDSELLNDKSLLLLGEGHDFRDQVLE--ACPTVRKGDENKHTTVESSSLETIRHMVASGLGVSVLPFSAVDSHHYAPG---VIEVRPFSAPVPFRTVAIAWRASFPRPRAIEVLADSIRLCSVA.. 299
8 -37.9001ixc_A mol:protein length:294 LysR-type regulatory protein  ali model follow..  12  1.........MEFRQLKYFIAVAEAGNMAAAAKRLHVSQPPITRQMQALEADLGVVLLERSHRGIELTAAGHAFLEDARRILELAGRSGDRSRAAARGDELSVAYFGTPIYRSLPLLLRAFLTSTPT-ATVSLTHMTKDEQVEGLLAGTIHVGFSRFFPRHPGIEIVNIAQ-EDLYLAVHRSQSGKFGKTCKLADLRAVELTLFPRGGRPS---FADEVIGLFKHAGIEPRIARVVEDATAALALTMAGAASSIVPASVAAIRWP------DIAFARIVGTRVKVPISCIF-RKEKQPPILARFVEHVRRSAKD.. 294
9 -37.8003isp_A mol:protein length:303 HTH-type transcriptional regulator Rv1985c/MT2039  ali model follow..  13  1....MVDPQLDGPQLAALAAVVELGSFDAAAERLHVTPSAVSQRIKSLEQQVGQVLVVRE-KPCRATTAGIPLLRLAAQTALLESEALAEGNASLKRTRITIAVNADSMATWFSAVFDGLGDVLL-----DVRIEDQDHSARLLREGVAMGAVTTERNPVPGCRVHPLGEMRYLPVASRPFVQRHLSDGFTAAAAAKAPSLAWNRDDGLQDMLVRKAFRRAITR-------THFVPTTEGFTAAARAGLGWGMFPEKLAASPLADGSF--------VRVCDIHLDVPLYWQCWKLDSPIIARITDTVRAAASG.. 291
10 -37.6004gwo_A mol:protein length:330 HTH-type transcriptional regulator CysB  ali model follow..  11  1.........MKLQQLRYIVEVVNHNNVSSTAEGLYTSQPGISKQVRMLEDELGIQIFARSGKHLTQTPAGQEIIRIAREVLSKVDAIKSVAGEHTWPDSLYIATTHTQARYALPGVIKGFIERYPR-VSLHMHQGSPTQIAEAVSKGNADFAIATEALHLYDDLVMLPCYHWNRSIVVTPDHPLAATSSVTIEALAQYPLVTYTFGFT-GRSELDTAFNRAGL----TPRIVFTATDADVIKTYVRLGLGVGVIASMAVDPLADPD-----LVRIDAHDIFSHSTTKIGFRRSTFLRSYMYDFIQRFAPHLTR.. 297
11 -37.3001al3_A mol:protein length:324 CYS REGULON TRANSCRIPTIONAL ACTIVATOR CYSB  ali model follow..  11  1.........MKLQQLRYIVEVVNHNNVSSTAEGLYTSQPGISKQVRMLEDELGIQIFARSGKHLT-TPAGQEIIRIAREVLSKVDAIKSVAGEHTWPDSLYVATTHTQARYALPGVIKGFIERYPR-VSLHMHQGSPTQIAEAVSKGNADFAIATEALHLYDDLVMLPCYHWNRSIVVTPEHPLATKGSVSIEELAQYPLVTYTFGFT-GRSELDTAFNRAGL----TPRIVFTATDADVIKTYVRLGLGVGVIASMAVDPVSDPD-----LVKLDANGIFSHSTTKIGFRRSTFLRSYMYDFIQRFAPHLTR.. 297
12 -36.1002h98_A mol:protein length:313 HTH-type transcriptional regulator catM  ali model follow..  10  1.........MELRHLRYFVTVVEEQSISKAAEKLCIAQPPLSRQIQKLEEELGIQLFERGFRPAKVTEAGMFFYQHAVQILTHTAQASSMAKRIATVSTLRIGYVSSLLYGLLPEIIYLFRQQNPE-IHIELIECGTKDQINALKQGKIDLGFGRLKITDPAIRRIMLHK-EQLKLAIHKHHHLNAATGVHLSQIIDEPMLLYPVSQKPN---FATFIQSLFTELGLVPSKLTEIREIQLALGLVAAGEGVCIVPASAMDIGVK------NLLYIPILDDDAYSPISLAV-RNMDHSNYIPKILACVQEVFATHH 297
13 -35.8002h99_A mol:protein length:312 HTH-type transcriptional regulator benM  ali model follow..  11  1.........MELRHLRYFVAVVEEQSFTKAADKLCIAQPPLSRQIQNLEEELGIQLLERGSRPVKTTPEGHFFYQYAIKLLSNVDQMVSMTKRIASVETIRIGFVGSLLFGLLPRIIHLYRQAHPN-LRIELYEMGTKAQTEALKEGRIDAGFGRLKISDPAIKHSLLRN-ERLMVAVHASHPLNKDKGVHLNDLIDEKILLYPSSPKPN---FSTHVMNIFSDHGLEPTKINEVREVQLALGLVAAGEGISLVPASTQSIQLF------NLSYVPLLDPDAITPIYIAV-RNMEESTYIYSLYETIRQIYAY.. 295
14 -35.2005y9s_A mol:protein length:304 VV2_1132  ali model follow..  10  7.......NPLEFKWLEDFLSLMELGNFSAAAKARFVTQSAFSRRIQALEVWIGVPLFDRTSYPITLTEHGQKFVPYAENLLNQVKVTKEDFAQASTDHTVRIVCLHTLAVNLLPKLFLQSAEALSHLLSVTPSVLGIDAHFQMLEDHSTDLLFTYNISAMRPSLSLED-KLEKCVIHSEKVVPVVAPRLLESLKADQTIPYLSYSEHTFLSKVVEPVLKTLPLTL----KPVFETTLSESLVKMAIGGAGVAWVPMHVIE--EELAQHRLVIAFEEQKEWQIPIDI-LCYRSTTNHRAAVDQFWQEIDK...... 303
15 -35.0005z7h_A mol:protein length:288 LysR family transcriptional regulator  ali model follow..  12  1.........MKIEDYRLLITLDETKTLRKAAEILYISQPAVTQRLKAIENAFGVDIFIRTKKQLITTTEGTMIIEHARDMLKRERLFFDKMQAHIGEVTISIGCSSLIGQTLLPEVLSLYNAQFPN-VEIQVQVGSTEQIKANHRDYHVMITRGNK---VMNLANTHLFN-DDHYFIFPKNRRDDV-TKLPFIEFQADPIYINQIKQWYNDNL------------EQDYHATITVDQVATCKEMLISGVGVTILPEIMMKNISKEQ----EFEKVEIDNEPLIRSTFMSYDPSMLQLPQVDSFVNLMASFVEQPK 287
16 -34.9005y2v_A mol:protein length:324 Rubisco operon transcriptional regulator  ali model follow..  15  4........QATLHQLKVFEATARHGSFTRAAEELYITQPTVSSQIKQLSKTVGLPLFEQIGKRLYLTEAGQELLVTCQDIFQRLDNFAMKVADIKGTKRLRLAVITTAK-YFIPRLLGEFIQKYPG-IEVSLKVTNHEQIRHRMQNNEDDLYIVSEPPEEIDLNYQPFLD-NPLVVIARRDHPLAGKSNIPITALNDEAFIMREKGSGT-RLAVQNLFHRHYVDV----RVRLELGSNEAIKQAIAGGMGISVLSQHTLVSEGARSELTLDIDEFPIK------RWYVANLAGKQLSVITQTFLDYLMAVTKNM. 299
17 -34.9005z72_A mol:protein length:293 CcpC  ali model follow..  10  1.........MQLQELHMLVVLAEELNMRKAAERLFVSQPALSQRLQTIEKAWGTKIFLRSQKGLTVTPAGEKIIQFANDVTDRQERIRENIDELEGEITLKLAVASIIGQHWLPKVLKTYVERYPN-AKVSLITGWSSEMLKSLYEDQVHIGIIRGNPEWK---RKDYLMTDHLYLVDTEISC------IDDIAHTDRPFIQFKSDSTYFQEIQHWWHQKFKT----SPKQTILVDQIETCKQMALHGIGYAILPSVTLEEEDKVNKMPLLDTK----------DTWLLGYEPAFELKQVQAFVSVIKDMLKQER 291
18 -25.1003szp_A mol:protein length:291 Transcriptional regulator, LysR family  ali model follow..  12  1.........MKLDDLNLFRLVVENGSYTSTSKKTMIPVATITRRIQALEDSLNLRLLNRHARKLTLTEAGERFYKDCSPLLERLASMEITDECRGASGRIRISAPSNLTKRMMMPMFNAFMEKYP---DIHIELMMSNQADDLDPTE-WDVIFRVGPQRDSSLIARKIGEVKDILVLSSHPQPTHAEE---------HQHQLLKGYPLLKWQLTNSQGETVVNSDRGR----FQASALNVVRSACSEGLGITLMPDVMLREFLEDG----SLVQVLSDWSSNPRDIYMLYNHKDHQPEKVRLFIDFVIGYHLQ.. 291
19 -24.2005fo5_A mol:protein length:92 HTH-TYPE TRANSCRIPTIONAL REGULATOR METR  ali model follow..  24  2.........IEVKHLKTLQALRNCGSLAAAAATLHQTQSALSHQFSDLEQRLGFRLFVRKSQPLRFTPQGEILLQLANQVLPQISQALQA................................................................................................................................................................................................................................. 82
20 -23.9003mz1_A mol:protein length:300 Putative transcriptional regulator  ali model follow..  3..............MRAFLRVVETGNFTRASASLNMPKATVTNLIQGLEAHLRTKLLNRTTRRVLVTPDGALYYERAARLLSDLDELSLSTAQSLPKGRLRVETASAFANLVIIPALPEFHKKYP---DIQIDLGVSDRTIDYLAEN-VDCAIRAGTLTDQSLIARRITEMKFVACLERHPVPQHPSD-------LEKNCYVVGYFLPKTGQQMPFHFRRGNEEIEVSGRYTMAANESTTYLAAARAGLGVIQAPLFMVREDLRNG----TMVPVLPDWQVEPMPIYLVYPPNRHLSSRLRVFADWVVKVMAQ.. 293
21 -23.3002hxr_A mol:protein length:238 HTH-type transcriptional regulator cynR  ali model follow..  16  5...................................................................QYASRALQELGAGKRAIHDVADLTRG-----SLRIAVTPTFTSYFIGPLMADFYARYPS-ITLQLQEMSQEKIEDMLCRDELDVGIAFAPVHSPELEAIPLLT-ESLALVVAQHHPLAVHEQVALSRLHDEKLVLLSAEFATRE-QIDHYCEKAGL----HPQVVIEANSISAVLELIRRTSLSTLLPAAIATQHDGLKAISLA--------PLLERTAVLLRRKNSWQTAAAKAFLHMALDKCAVVG 233
22 -22.7005xxp_A mol:protein length:101 LysR-type regulatory protein  ali model follow..  17  1.........MEFRQLKYFIAVAEAGNMAAAAKRLHVSQPPITRQMQALEADLGVVLLERSHRGIELTAAGHAFLEDARRILELAGRSGDRSRAAARENLYFQGA................................................................................................................................................................................................................... 95
23 -22.3003m1e_A mol:protein length:94 HTH-type transcriptional regulator benM  ali model follow..  19  1.........MELRHLRYFVAVVEEQSFTKAADKLCIAQPPLSRQIQNLEEELGIQLLERGSRPVKTTPEGHFFYQYAIKLLSNVDQMVSMTKR.............................................................................................................................................................................................................................. 84
24 -22.1003hhg_A mol:protein length:306 Transcriptional regulator, LysR family  ali model follow..  13  4..........NSEELTVFVQVVESGSFSRAAEQLAMANSAVSRIVKRLEEKLGVNLLNRTTRQLSLTEEGAQYFRRAQRILQEMAAAEMLAVHEIPQGVLSVDSAMPMVLHLLAPLAAKFNERYP---HIRLSLVSSEGYINLIERK-VDIALRAGELDDSGLRARHLFDSRFRVI-ASPEYLAKHGTPQSTEELAGHQCLGFTEPGSLNT-------VLDAQGNPYKISPHFTASSGEILRSLCLSGCGIVCLSDFLVDNDIAEGKL---IPLLAEQTSDKTHPFNAVYYSDKAVNLRLRVFLDFLVEELGN.. 295
25 -21.8004xws_A mol:protein length:227 OxyR  ali model follow..  11  9..................................................................................................PLKVGAIYTIGPYLFPHLIPQLHRVAPQ-MPLYIEENFTHILRDKLRTGELDAIIIALPFQEADVLTKPLFD-EPFYVLMPADHPWTAKASIDSELLNDKSLLLLGEGHDFRDQVLE--ACPTVRKGDENKHTTVESSSLETIRHMVASGLGVSVLPFSAVDSHHYAPG---VIEVRPFSAPVPFRTVAIAWRASFPRPRAIEVLADSIRLCSVAR. 217
26 -21.7003jv9_A mol:protein length:219 Transcriptional regulator, LysR family  ali model follow..  16  1..............................................................................................ELEGAFKLGLIFTVAPYLLPKLIVSLRRTAPK-MPLMLEENYTHTLTESLKRGDVDAIIVAEPFQEPGIVTEPLYD-EPFFVIVPKGHSFEELDAVSPRMLGEEQVLLLTEGNCMRDQVLSSCSELAAKQRIQGLTNTLQGSSINTIRHMVASGLAISVLPATALTENDHM-----LFSIIPFEGTPPSRRVVLAYRRNFVRPKALSAMKAAIMQSQLH.. 212
27 -21.6003ho7_A mol:protein length:232 OxyR  ali model follow..  12  1.......................................................................................IIEEEQQSLTGRLNIAVLPTIAPYLLPRVFPIWKKELAG-LEIHVSEMQTSRCLASLLSGEIDMAIIASKAETEGLEDDLLYY-EEFLGYVSRCEPLFEQDVIRTTEVNPHRLWLLDEG----HCFRDQLVRFCQMKGLHERQTAYSGGSMEAFMRLVESGQGITFIPQLTVEQLSPSQKELVR----PFGMPRPVREVRLAVRQDYSRRKLREQLIGLLRSAVPS.. 216
28 -21.5001i69_A mol:protein length:219 HYDROGEN PEROXIDE-INDUCIBLE GENES ACTIVATOR  ali model follow..  10  6..................................................................................................PLHIGLIPTVGPYLLPHIIPMLHQTFPK-LEMYLHEAQTHQLLAQLDSGKLDAVILALVKESEAFIEVPLFD-EPMLLAIYEDHPWANREAVPMADLAGEKLLMLEDGHS-----LRDQAMGFCFEAGADEDTHFRATSLETLRNMVAAGSGITLLPALAVPPERKRDGVVY----LPAIKPEPRRTIGLVYRPGSPLRSRYEQLAEAIRARMDGH. 210
29 -21.1005b70_A mol:protein length:219 LysR family transcriptional regulator  ali model follow..  13  2...................................................................................AMELGSLCQGDSMQGQLKLGCIPTIAPFLLCDLVQEINQRFPQ-LNLLLREDTTTNLLTALRHGELDVLILALPVEIDGMESRVVGQ-DPFKMVISRHQAGAIKVPIKYDDLPDESVFLLEKGHC-----LTEHAVSACKLTDKEKINPFSATSLHTLVQMVANGLGTTFIPQMAIDHGLLDNQ---NLVVIEPPGQQAYRDIGLVWRPSSSRSKTFNQLAEVVSELL.... 219
30 -20.5005ted_B mol:protein length:226 Lmo0488 protein  ali model follow..  14  4..................................................................................................NIDLGFIYTMGAHTVPELVQNFTKESHKDITFSFFQGATKSIIPDLKNEKFDLAICSYVENEPDIEFLPLTK-QELVVVVAENHPLAKYDSIDLQDTADYSYIFFSDTSGLRP-LIDSLFAEINI----QPKIGCYVEEDTAMVGLVSVDYGISIMPKISSLAHYNVKVLSIN--------PKHDRFIYLASLKNHYISPASKAFKDFALRYGKK.. 206
31 -20.3004pzj_A mol:protein length:70 Transcriptional regulator, LysR family  ali model follow..  24  1.........MLDFRVETFLTVCRTMNYTRAAEELNITQPAVSQHIAHLERDYGVPLFAYRNKKLQLTDAGALLRDALST............................................................................................................................................................................................................................................ 70
32 -19.9004lq2_A mol:protein length:245 HTH-type transcriptional regulator CysB  ali model follow..  9..................................................................................................SLYIATTHTQARYALPGVIKGFIERYPR-VSLHMHQGSPTQIAEAVSKGNADFAIATEALHLYDDLVMLPCYHWNRSIVVTPDHPLAATSSVTIEALAQYPLVTYTFGFTGRS-ELDTAFNRAGL----TPRIVFTATDADVIKTYVRLGLGVGVIASMAVDPLADPDLVRIDAHDIFSH------TTKIGFRRSTFLRSYMYDFIQRFAPHLTR.. 212
33 -19.6004ab5_A mol:protein length:222 TRANSCRIPTIONAL REGULATOR, LYSR FAMILY  ali model follow..  14  9..................................................................................................ELRIAVECHTCFDWLMPAMGEFRPMWPQ-VELDIVSGFQADPVGLLLQHRADLAIVSEAEKQNGISFQPLFA-YEMVGICAPDHPLAAKNVWTAEDFIGETLITYPVPDEM------LDLPKKILIPKNINPPRRHSELTIAIIQLVASRRGIAALPYWTVMPYLEKG----YVVHRQITADGLQSKLYAAIRTEDTDKSYLNNFCQIIRE...... 207
34 -18.7005vvh_A mol:protein length:210 Octopine catabolism/uptake operon regulatory protein OccR  ali model follow..  11  4..................................................................................................TLRIAAMPALANGLLPRFLAQFIRDRPN-LQVSLMGLPSSMVMEAVASGRADIGYADGPQERQGFLIETR--SLPAVVAVPMGHRLAGLDRVTPQDLAGERIIKQETGTLFAMRV-------EVAIGGIQRRPSIEVSLSHTALSLVREGAGIAIIDPAAAIEFTD------RIVLRPFS-IFIDAEFLEVRSAIGAPSTIVDRFTTEFWRFHDDL. 202
35 -18.5002ql3_A mol:protein length:209 Probable transcriptional regulator, LysR family protein  ali model follow..  10  6..................................................................................................PIAVGCYPALGPTILPSMLYAFTAEYPR-ASVEFREDTQNRLRTQLEGGELDVAIVYDLDLSPEWQTVPLMT-REPMVVLGAEHPLAGVDGVRLADLAEHPMVLLDAPPST------NHAMDVCREAGFAPRVAYRTANFETARAFVGRGLGWTLLLQRPRVDVTYEGL-PVVVKPIAEPKPA-SVAVVVAWHQEATLSRVARAFIRFVTAGS.... 209
36 -18.5002fyi_A mol:protein length:228 HTH-type transcriptional regulator cbl  ali model follow..  11  15..................................................................................................VLTIATTHTQARYSLPEVIKAFRELFPE-VRLELIQGTPQEIATLLQNGEADIGIASERLSNDPQLVAFPWFRWHHSLLVPHDHPLTQISPLTLESIAKWPLITYRQGITGRS-RIDDAFARKGL----LADIVLSAQDSDVIKTYVALGLGIGLVAEQSSGEQEEENLIRLDTRHLFDA------TVWLGLKRGQLQRNYVWRFLELCNAGLSV.. 218
37 -18.2004jvc_A mol:protein length:216 Transcriptional regulator MvfR  ali model follow..  1..................................................................................................NLRVLLDTAIPPSFCDTVSSVLLDDFNM-VSLIRTSPADSLATIKQDNAEIDIAITIDEELKISRFNQCVLGYTKAFVVAHPQHPLCNASLHSIASLANYRQISLGSRSGQHSNLLRPVSDK-----------VLFVENFDDMLRLVEAGVGWGIAPHYFVEERLRNGT--LAVLSELYEPGGIDTKVYCYYNTALESERSFLRFLESARQRLREL. 202
38 -17.2005tpi_A mol:protein length:211 Putative transcriptional regulator (LysR family)  ali model follow..  5..............................................................................................EPQGLFSLGSLESTAAVRIPSTLAHFNQRYPK-IHLALSTGPSGTMIDGVLEGALSAAFVDGPLVHPGLEGLPVFP-EEMMIVAPYGHAPITRAS------VNGANVYAFRANCSYRRHFESWFHADRA----TPGRIHEMESYHGMLACVIAGAGLALIPRSMLESMPGHQQVSA----WPLAEEWRWLTTWLVWRRGAKT-RQLEAFIALLNEDRQTVV 209
39 -14.0005z49_B mol:protein length:239 HTH-type transcriptional activator CmpR  ali model follow..  14  5..................................................................................................QLRLAVITTAK-YFIPRLIGPFCQRYPG-INVSLKVTNHEGLINRINDNLDDLYVLSRPPSGFDITVQPFLD-NPLVVVGPASHPLANQRGISLERLAQEPFILRERGSGTRE-ATEQLFAAHNLNL----NVKLDLGSNEAIKQAILGGLGLAVLSYHTLTSAGATPELKFEVEGFPIH------QWHAVYPAGKQLSTVAATFLDYLLTESQRI. 208
40 -14.0005y2w_A mol:protein length:234 Rubisco operon transcriptional regulator  ali model follow..  14  6..................................................................................................RLRLAVITTAK-YFIPRLLGEFIQKYPG-IEVSLKVTNHEQIRHRMQNNEDDLYIVSEPPEEIDLNYQPFLD-NPLVVIARRDHPLAGKSNIPITALNDEAFIMREKGSGTRL-AVQNLFHRHYVDV----RVRLELGSNEAIKQAIAGGMGISVLSQHTLVSEGARSELTI--------LDIDEFPIKRRWYVANLAGKQLSVITQTFLDYLMA.. 204
41 -13.9002ijl_A mol:protein length:135 Molybdenum-binding transcriptional repressor  ali model follow..  24.........LGHGKVELMQLIAETGSISAAGRAMDMSYRRAWLLVDALNHMFRQPVICSQGGGAALTVFGAELLERYRGMEERMNEALRE................................................................................................................................................................................................................................. 109
42 -12.1005yez_A mol:protein length:209 Cell density-dependent motility repressor  ali model follow..  13  5..............................................................................................YTLRKIKIAAAHSLSLGLLPTIVKQMPTQFT----YAVEAIDVDQAVDMLREGQSDFIF-HDENLQQAPFDNIRLFESRLFPVCANNGRGEPRYTLEQPHF-----LLNYSQNSYQGRLINRTLTRHAEL---SFSTFFVSSMSELLKQVAMDGCGIAWLPEYAIRQEITDG----RLIVLDADELVIPIQAYA-YRMNTRMSQVAETFWRDLRGLQAAL. 209
43 -11.3003onm_A mol:protein length:238 Transcriptional regulator LrhA  ali model follow..  13  1........................................................................MGSSSSGLVPRGSHMYSN------EGSLIIGASDDTADTLLPFLLNRVATLYPR-LAIDVRVKRSPFIADMLSSGEVDLAITTAKVDSHP---HVILRTSPTLWYCSVDYQFQPGEPVPL---------VVMDEPSLYREMAIEHLTQAGVP-----RIAYVASSLSAIRAAVRAGLGVTARPIEMMS--------DLRVLGETEGLPGLPETRYVLCKDKQCDNELALAIFSALQNSYQH.. 212
44 -11.2001b9m_A mol:protein length:265 PROTEIN (MODE)  ali model follow..  14  20.........ADPRRISLLKHIALSGSISQGAKDAGISYKSAWDAINEMNQLSEHILVERAGGGAVLTRYGQRLIQLYDLLAQIQQKAFDVLSD-----DDALPLNSLLAAISRFSLQTSARNQWFGTITARDHDDVQQHVDVLLADGKTRLK---VAITAQSGARLGLDEGKEVLILLKAPWVGITQDAQNADNQLPGIISHIERGAEQC-------------------EVLMALPDGQTLCATVPVNEATSLQQGQNVTAYFNADSVIIATL.......................................... 264
45 -10.2002p8t_A mol:protein length:200 Hypothetical protein PH0730  ali model follow..  10  17..........VEDVLAVIFLLKEPLGRKQISERLELGEGSVRTLLRKLSHL---DIIRSKQRGHFLTLKGKEIRDKLLSMFSEPIGV.................................................................................................................................................................................................................................... 90
46 -9.8904em0_B mol:protein length:178 Uncharacterized HTH-type transcriptional regulator SAR2349  ali model follow..  53TEPILEKHNIYYGQWLILRDIAKHQPTTLISHRRAIEKPTARKTLKALIE---NDLITVENSLLTLTPKGHELYEIVCLDVQKLQQAVVAKTNISQDQMQETIN-------VMNQIHEILLKEA............................................................................................................................................................................................... 175
47 -9.7101r1t_A mol:protein length:122 Transcriptional repressor smtB  ali model follow..  14  45..........DPNRLRLLSLLARELCVGDLAQAIGVSESAVSHQLRSLRNL-------KQGRHVYYQLQDHHIVALYQNALDHLQEC.................................................................................................................................................................................................................................... 121
48 -9.5805eri_A mol:protein length:169 MarR family transcriptional regulator  ali model follow..  13  41.....KYKELKLQ-FTFLTRICENPGINLVSNMLKVDKATTTKAIQKLIKA-FD----KRGYNLTPTDKSLEVYELIIEEENRSIEICFDNFTDEEKQVVTKLLEKMSKNV............................................................................................................................................................................................................ 154
49 -9.4902lkp_A mol:protein length:119 Transcriptional regulator, ArsR family  ali model follow..  14  31..........TPSRLMILTQLRNPLPVTDLAEAIGMEQSAVSHQLRVLRNL-------RAGRSIVYSLYDTHVAQLLDEAIYHSEH..................................................................................................................................................................................................................................... 106
50 -9.4802x4h_A mol:protein length:139 HYPOTHETICAL PROTEIN SSO2273  ali model follow..  12  2MRVDSQMSNLSRREFSYLLTIKRYNKINRIAKDLKIAPSSVFEEVSHLEE---KGLVKKKEDGVWITNNGTRSINYLIKAHRVIEILLVNQTACEYSKQFDYLIPEEIIDKLYNYL....................................................................................................................................................................................................... 125
51 -9.4001r22_A mol:protein length:122 Transcriptional repressor smtB  ali model follow..  14  45..........DPNRLRLLSLLARELSVGDLAQAIGVSESAVSHQLRSLRNL-------KQGRHVYYQLQDHHIVALYQNALDHLQES.................................................................................................................................................................................................................................... 121
52 -9.3703fd3_A mol:protein length:208 chromosome replication initiation inhibitor protein  ali model follow..  3..................................................................................................TLNIATNADSLGTWFLDAVSKFTGGSDYLVNIAVD--DQDHTVEWLRGGRVLAAVTAHDKPVQGCRVTPLGVLRYHATASPDFMARHFADGVTPAALARAPGLTFNQKDRLQASWIRTALGEDVSY-------THWLPSTDGFVKASLAGMGWGLNPVQLVAEHLAAGRL----------MPGTPLDIPLYWQVNRLAAERLAGLTANMVGTARV.. 202
53 -9.2102h09_A mol:protein length:155 Transcriptional regulator mntR  ali model follow..  17  28QVREAHRRELIDDYVELISDLIREVGEARQAARLGVSQPTVAKMLKRLATM----IEMIPWRGVFLTAEGEKLAQESRERHQIVENFL................................................................................................................................................................................................................................... 116
54 -9.0603s2w_A mol:protein length:159 Transcriptional regulator, MarR family  ali model follow..  11  39IGKKIEPYGIGSGQFPFLMRLYREDGINQESDYLKIDKGTTARAIQKLVDE-KD----RRSYRVFLTEKGKKLEPDMKKIASEWGEILFSSFDDRQRREITNSLEIMFENG............................................................................................................................................................................................................ 155
55 -9.0502jsc_A mol:protein length:118 Transcriptional regulator Rv1994c/MT2050  ali model follow..  17  20..........DPTRCRILVALLDVCYPGQLAAHLGLTRSNVSNHLSCLRGC-------YEGRQVRYALADSHLARALGELVQVVLA..................................................................................................................................................................................................................................... 95
56 -9.0403bpx_A mol:protein length:148 Transcriptional regulator  ali model follow..  13  25IGRELGHLNLTDAQVACLLRIHREPGIKQDATFFHVDKGTIARTLRRLEES-EN----RRRYILEVTRRGEEIIPLILKVEERWEDLLFRDFTEDERKLFRKMCRRLAEEA............................................................................................................................................................................................................ 141
57 -9.0104mnu_A mol:protein length:153 SlyA-like transcription regulator  ali model follow..  14  22SNIEFKELNLAKGQFIYLVRICENQGIIQEVDILKIDRTTASRAIKNLEK---NGLIIKKQN-LFPTEKGQQLYPLIIRENEYSNAVALKGFTEAEINMLTDALKKVKENI............................................................................................................................................................................................................ 138

FFAS is supported by the NIH grant R01-GM087218-01
1 3 9 5 5 6   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Doctor KS, Reed JC, Godzik A., Bourne PE. The apoptosis database. Cell Death Differ. 2003 Jun;10(6):621-33. Review.