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Query: gi|16759006|ref|NP_454623.1| chaperone protein DnaJ (STY0013) [Salmonella enterica subsp. enterica serovar Typhi str. CT18], from S.typhi

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MAKRDYYEILGVSKTAEEREIKKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDAQKRAAYDQYGHAAFEQGGMGGGFGGGFNGGADFSDIFGDVFGDIFGGGRGRQRAARGADLRYNMDLTLEEAVRGVTKEIRIPTLEECDVCHGSGAKAGTQPQTCPTCHGSGQVQMRQGFFAVQQTCPHCQGRGTLIKDPCHKCHGHGRVEKSKTLSVKIPAGVDTGDRIRLAGEGEAGEHGAPAGDLYVQVQVKQHPIFEREGNNLYCEVPINFAMAALGGEIEVPTLDGRVMLKVPSETQTGKLFRMRGKGVKSVRGGAQGDLLCRVVVETPVGLSEKQKQLLKDLQESFGGPTGEKNSPRSKSFFDGVKKFFDDLTRLast
1 -76.400PF01556.18; T0NBZ6_9EURY/129-343; DnaJ C terminal domain  ali follow..  34  1.......................................................................................................................LLTNLRISLEDAYYGAKKTIKYRRNAECQTCHGTGSKDGK-LVTCKDCNGTGQQRVVQFRMVTVTTCKTCGGRGKVPSVVCPDCHGTGSVPVTENLEITVPKGAPDRLRLRIKGKGQSH--FGRTGDLYVVLNVEETPGMKRINDDIYIVEEIGFPEAALGVEKEIKLFRETLTFKIPAGTQPGEVLRIKGAGFQHMNGRGSGDVLVEIKVAVP.............................................. 215
2 -39.100PF00226.31; Q22028_CAEEL/17-79; DnaJ domain  ali follow..  55  1....DFYQLLGVEKMASEAEIKSAYRKLALKYHPDRNPNDAHAQEEFKKVSIAYSVLSDPNKRRQYD........................................................................................................................................................................................................................................................................................................................ 63
3 -28.400PF00684.19; DNAJ_LACP7/149-213; DnaJ central domain  ali follow..  50  1..................................................................................................................................................CETCHGSGAKPGSSAETCHKCNGKGQVTFTQGMVRNVQTCPDCRGTGKIIKEKCPDCYGSG............................................................................................................................................................................ 65
4 -21.800PF03656.13; TIM16_CAEEL/1-135; Pam16  ali follow..  13  62ISLEESLQILNVKTPLNREEVEKHYEHLFNINDKSKG----GTLYLQSKVFRAKERIDEEFGRIELKEEKKKEENAKT............................................................................................................................................................................................................................................................................................................. 135
5 -19.400PF15777.5; Q65NU7_BACLD/1-52; Tryptophan RNA-binding attenuator protein inhibitory protein  ali follow..  28  1..............................................................................................................................................................................MVIATDDLETTCPNCNGSGREEPEPCPKCSGKGVILTAQGSTLFIKKHLN........................................................................................................................................................... 52
6 -13.200PF14537.6; D4H4F3_DENA2/139-220; Cytochrome c3  ali follow..  26  7................................................................................................................................................VFCNGCHGIALPSEVSNVTCLGCHGELKALQKKTESAEDIACTVCHHIHTEQTAYCVNCH............................................................................................................................................................................... 81
7 -10.400PF13447.6; Q60AB1_METCA/169-436; Seven times multi-haem cytochrome CxxCH  ali follow..  17  1..............................................................................................................................................KEVGCIDCHGKVGAQSIRRTQCGSCHLQEFAEAESEK-EIAQGCDMCHYQQNRQPEACATCHNGVDHNEWENYT................................................................................................................................................................... 133
8 -10.200PF02085.16; Q6XCI5_DESBA/13-115; Class III cytochrome C family  ali follow..  26  25...........................................................................................................................................SKHATVECAQCHHEADGGAVKKCTTSGCHDSLEFRDKANAKAYHTQCIDCHKALKKDKKPCGKCH............................................................................................................................................................................... 103
9 -10.000PF05458.12; SIVA_HUMAN/1-175; Cd27 binding protein (Siva)  ali follow..  9  1...........................MPKRSCPFADVAPLQLKVRVSQRELSRGVCAERYSQEVFEK-AQAYLDHVWDEGCAVVHLPESPKPGPTGAPRAARGQMLIGPDGRLIRSLGQASEADPSGVASIACSSCVRAVDGKAVCGQCERALCGQ---VRTCWGCG--------------SVACTLCG-SDMYEKVLCTSCA............................................................................................................................................................................... 171
10 -9.850PF12773.7; A4H9B2_LEIBR/373-437; Double zinc ribbon  ali follow..  20  1..................................................................................................................................................CQHC---GEDIPRGSCFCGTCGQPPGGTNEGVSTARRLVCPACEALSDADGNFCDNCG............................................................................................................................................................................... 65
11 -9.580PF17032.5; J9D3W3_EDHAE/30-102; zinc-ribbon family  ali follow..  20  3..................................................................................................................................................CDKCGNRRISKGTPYLSCNYCEASFGGHG-------TNICEDCRTAVPSQFKYCPHCG............................................................................................................................................................................... 73
12 -9.530PF14687.6; M4AL98_XIPMA/24-133; Domain of unknown function (DUF4460 topsan)  ali follow..  17  2............QRALSAAEAVNALRPFYFAVHPDFFGQFPREENSLKQLNGYMENLQKPDLKL........................................................................................................................................................................................................................................................................................................................... 57
13 -9.520PF12660.7; S7ZRM5_PENO1/600-697; Putative zinc-finger of transcription factor IIIC complex  ali follow..  17  1.....................................................................................................................................AQFSGPGAHLFERCEICDAGISWTSANDARCVECGLSFLAIQEPG---LSKYCSLCRTEYINEEDTCLYCGGK............................................................................................................................................................................. 97
14 -9.400PF05444.12; B4LLR0_DROVI/704-847; Protein of unknown function (DUF753 topsan)  ali follow..  14  46.................................................................................................................................SSLATSQLRACLKGEGNCEVCEGTLCNTEADRRRCQRCNSVEDPNCGSAP-ATYRGCQTEFQCDDSDKQYCRSCA............................................................................................................................................................................... 144
15 -9.230PF03264.14; Q87GW4_VIBPA/15-185; NapC/NirT cytochrome c family, N-terminal region  ali follow..  20  31.............................................................................................................................................NTEEFCSGCHAPYSNRSGVRAICSDCHVPHEWEWARMKKNDSLECRNCHEFDYMGDKTCVDCHKG............................................................................................................................................................................. 163
16 -9.210PF15913.5; H2MI93_ORYLA/41-153; Furin-like repeat, cysteine-rich  ali follow..  16  37...............................................................................................................................LASCPVGYFGMRNPEGNNRCTQCKIDNCEACFNRNFCTKCSGRCYVSCPPGQRTANETMECV-------GQHALKCE............................................................................................................................................................................... 113
17 -9.100PF04216.12; B4EFM8_BURCJ/22-308; Protein involved in formate dehydrogenase formation  ali follow..  11  14AFAARAARLRKLADLNPISGYLRLMATVAHATLQALELPLPSKEAIARAQEHSMPLVPDARWRAVLYELLDRVESAGLVNPQLAKLLDRLRLMAPALDAQADAILALRFAEVDPATAPFLMAALQVAWTDLASRVTPTDVPYLDQPCPVCGTGGQYQGYRFLQCGLCTTEWHMVRTK--------CSHCDSTKGI--ESCDECKTYRKIGYQEKDY-EFEPLADDLASLTL--------------DL-----LMNEAGYQRSSPNPL................................................................................................................ 285
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 6 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Pio F, Chu Z, Reed JC, Godzik A. PAAD - a new protein domain associated with apoptosis, cancer and autoimmune diseases. Trends Biochem Sci. 2001 Feb;26(2):85-7.