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Query: gi|16759006|ref|NP_454623.1| chaperone protein DnaJ (STY0013) [Salmonella enterica subsp. enterica serovar Typhi str. CT18], from S.typhi

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MAKRDYYEILGVSKTAEEREIKKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDAQKRAAYDQYGHAAFEQGGMGGGFGGGFNGGADFSDIFGDVFGDIFGGGRGRQRAARGADLRYNMDLTLEEAVRGVTKEIRIPTLEECDVCHGSGAKAGTQPQTCPTCHGSGQVQMRQGFFAVQQTCPHCQGRGTLIKDPCHKCHGHGRVEKSKTLSVKIPAGVDTGDRIRLAGEGEAGEHGAPAGDLYVQVQVKQHPIFEREGNNLYCEVPINFAMAALGGEIEVPTLDGRVMLKVPSETQTGKLFRMRGKGVKSVRGGAQGDLLCRVVVETPVGLSEKQKQLLKDLQESFGGPTGEKNSPRSKSFFDGVKKFFDDLTRLast
1 -44.900d2yuaa1 a.2.3.0 (A:8-93) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  40  7YSRTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRKYDRGLLSDEDLRGPG........................................................................................................................................................................................................................................................................................................... 86
2 -41.200d2o37a_ a.2.3.0 (A:) automated matches {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}  ali model 3D-neighbors follow..  51  2VKETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGD---TEKFKEISEAFEILNDPQKREIYDQYGLEAARSGGPSFG......................................................................................................................................................................................................................................................................................................... 80
3 -41.200d2cuga1 a.2.3.0 (A:8-82) automated matches {Mouse (Mus musculus) [TaxId: 10090]}  ali model 3D-neighbors follow..  50  7ALDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNK-DPGAEDRFIQISKAYEILSNEEKRTNYDHYG..................................................................................................................................................................................................................................................................................................................... 75
4 -40.100d3ucsc1 a.2.3.0 (C:2-73) automated matches {Escherichia coli K-12 [TaxId: 83333]}  ali model 3D-neighbors follow..  54  2..LKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSK-EPDAEARFKEVAEAWEVLSDEQRRAEYDQMWQ.................................................................................................................................................................................................................................................................................................................... 69
5 -39.300d1wjza1 a.2.3.1 (A:8-88) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]}  ali model 3D-neighbors follow..  35  7.LKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADEECMQKFIEIDQAWKILGNEETKKKYDLQ...................................................................................................................................................................................................................................................................................................................... 80
6 -36.700d1exka_ g.54.1.1 (A:) Cysteine-rich domain of the chaperone protein DnaJ {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  96  1.....................................................................................................................................GVTKEIRIPTLEECDVCHGSGAKPGTQPQTCPTCHGSGQVQMRQGFFAVQQTCPHCQGRGTLIKDPCNKCHGHGRVERS....................................................................................................................................................................... 79
7 -35.800d1gh6a1 a.2.3.1 (A:7-117) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]}  ali model 3D-neighbors follow..  18  3.ESLQLMDLLGLERSAWGNLMRKAYLKKCKEFHPDKGG----DEEKMKKMNTLYKKMEDGVKYAHQPDFGGFWDATEIPTYGTDEWEQWWNAFENLFCSEEMPSSDDEAT............................................................................................................................................................................................................................................................................. 111
8 -29.900d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]}  ali model 3D-neighbors follow..  17  9.DKERLLELLKLPRQGDFGRMQQAYKQQSLLLHPDKGGS----HALMQELNSLWGTFKTEVYNLRMNLGGTG................................................................................................................................................................................................................................................................................................................... 77
9 -29.200d1iura1 a.2.3.1 (A:14-88) Hypothetical protein KIAA0730 {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  27  2..LKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDANEVFKHLQNEINRL---EKQAFLDQNADRASRRT.............................................................................................................................................................................................................................................................................................................. 74
10 -28.000d3agxa2 b.4.1.0 (A:246-340) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  24  1.................................................................................................................................................................................................................................................................IFKRDGSDVIYPARISLREALCGCTVNVPTLDGRIPVVFKDVIRPGMRRKVPGEGLPLPKTPERGDLIIEFEVIFPERIPQTSRTVLEQVLPI............................. 95
11 -27.700d1c3ga2 b.4.1.1 (A:260-349) Heat shock protein 40 Sis1 {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}  ali model 3D-neighbors follow..  26  2..................................................................................................................................................................................................................................................................FKRDGDDLIYTLPLSFKESLLGFSKTIQTIDGRLPLSRVQPVQPSQTSTYPGQGMPTPKNPSRGNLIVKYKVDYPISLNDAQKRAID.................................. 90
12 -26.800d2q2ga2 b.4.1.0 (A:87-179) automated matches {Cryptosporidium parvum [TaxId: 353152]}  ali model 3D-neighbors follow..  24  2..................................................................................................................................................................................................................................................................FTRDDCHLIMKVTIPLVRALTGFTCPVTTLDNRLQIPIKEIVNPKTRKIVPNEGMPIKNQPGKGDLILEFDICFPKSLTPEQKKLIKEA................................ 92
13 -24.800d1nlta3 g.54.1.1 (A:139-212) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}  ali model 3D-neighbors follow..  30  1..............................................................................................................................................KQILCKECEGRGGKKGA-VKKCTSCNGQGIKFVTRMIQRFQTECDVCHGTGDIIKDRCKSCNGKKVENE........................................................................................................................................................................ 74
14 -23.000d2q2ga1 b.4.1.0 (A:4-86) automated matches {Cryptosporidium parvum [TaxId: 353152]}  ali model 3D-neighbors follow..  25  9......................................................................................................................................................................................VTLEELYLGKRKKIKVTRKRFIEHKVRNEENIVEVEIKPGWKDGTKLTYSGEGDQESPGTSPGDLVLIIQTKTHP.......................................................................................................................... 83
15 -21.900d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  24  2....DYFTLFGLPAQLDTQALSLRFQDLQRQYHPDKFASGSQAVQQSATINQAWQTLRHPLMRAEY......................................................................................................................................................................................................................................................................................................................... 70
16 -21.400d1nlta2 b.4.1.1 (A:258-337) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}  ali model 3D-neighbors follow..  25  2..................................................................................................................................................................................................................................................................FKRDGDDLVYEAEIDLLTAIAGGEFALEHVSGDLKVGIVPGIAPGMRKVIEGKGMPIPKYGGYGNLIIKFTIKDPE............................................. 80
17 -18.400d1c3ga1 b.4.1.1 (A:180-259) Heat shock protein 40 Sis1 {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}  ali model 3D-neighbors follow..  21  1.....................................................................................................................ETVQVNLPVSLEDLFVGKKKSFKI---------------------GRKGPHGASE---------------------------------------KTQIDIQLKPGWKAGTKITYKNQGDYNPQTGRRKTLQFVIQEKSHP.......................................................................................................................... 80
18 -14.100d1nlta1 b.4.1.1 (A:110-138,A:213-257) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}  ali model 3D-neighbors follow..  28  1.................................................................................................................PQRGKDIKHEISASLEELYKGRTAKLALN--------------------------------------------------------------------XRKILEVHVEPGMKDGQRIVFKGEADQAP-DVIPGDVVFIVSERPHK.......................................................................................................................... 75
19 -13.900d1qo8a1 a.138.1.3 (A:2-102) Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain {Shewanella frigidimarina [TaxId: 56812]}  ali model 3D-neighbors follow..  21  9.............................................................................................................................................ADMGSCQSCHAKPIKVTHENAQCKSCHGEYAELANDKLQFDDINCTSCHKGHEEPKFYCNECHSF............................................................................................................................................................................. 84
20 -13.700d1y0pa1 a.138.1.3 (A:1-102) Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain {Shewanella frigidimarina [TaxId: 56812]}  ali model 3D-neighbors follow..  23  12................................................................................................................................................QECDSCHTPDGELSNDSTQCVSCHGTLAEVAETTK-PGEVACTSCHSAHEKSMVYCDSCH............................................................................................................................................................................... 86
21 -13.000d3caoa_ a.138.1.1 (A:) Cytochrome c3 {Desulfovibrio africanus [TaxId: 873]}  ali model 3D-neighbors follow..  21  8......................................................................................................................PTDAFGKLERPAAVFNHDEHNEKAGIESCNACHHV-EDEDSVGTPCSDCHALEQDGDTPGL-AYHQQCWGCHEKQAKGPVMCGECHVK............................................................................................................................................................................. 102
22 -12.200d1m1qa_ a.138.1.3 (A:) Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain {Shewanella oneidensis [TaxId: 70863]}  ali model 3D-neighbors follow..  24  13.................................................................................................................................................GCESCHKDGTPSADGAAQCQSCHGKSEMDAVHKPHDGNLVCADCHDMNVGQKPTCESCHDDGRTS......................................................................................................................................................................... 84
23 -11.700d1ofwa_ a.138.1.1 (A:) Nine-heme cytochrome c {Desulfovibrio desulfuricans, ATCC 27774 [TaxId: 876]}  ali model 3D-neighbors follow..  21  220.............................................................................................................................................KPEILCATCHHRS-PLSLTPPKCGSCHTKEIDKANPGR-AYHLQCMGCHKGARPRDTDCTTCHKAA............................................................................................................................................................................ 291
24 -11.400d1i77a_ a.138.1.1 (A:) Cytochrome c3 {Desulfovibrio desulfuricans, different strains [TaxId: 876]}  ali model 3D-neighbors follow..  18  23...........................................................................................................................................AVHAKVECVTCHHQVDGKESAKCGSSGCHDDLAGKQGEKSLLKHTNCIGCHSK-DLTACAKSKCH............................................................................................................................................................................... 106
25 -11.200d1gyoa_ a.138.1.1 (A:) Cytochrome c3 {Desulfovibrio gigas, di-tetraheme cytochrome c3 [TaxId: 879]}  ali model 3D-neighbors follow..  18  29...........................................................................................................................................AKHRNVSCVSCHHM-FDGCGDFQKCADCHIDRDDRSYERGFYKAISCRGCHKAMKAKNEQLQGCH............................................................................................................................................................................... 104
26 -10.700d2bq4a_ a.138.1.0 (A:) automated matches {Desulfovibrio africanus [TaxId: 873]}  ali model 3D-neighbors follow..  13  23.............................................................................................................................VKFSHKAHASLGTDAAA----CQKCHHKWDGKSEGGCATEGCHADTTSFKAT-HSKSPMSCQGCHKEMKTAKKTCAQCH............................................................................................................................................................................... 113
27 -10.700d1aqea_ a.138.1.1 (A:) Cytochrome c3 {Desulfovibrio desulfuricans, different strains [TaxId: 876]}  ali model 3D-neighbors follow..  14  30...........................................................................................................................................ASHMDIACQQCHHTPDTYTIESCMTEGCHDNIKERTEISSVDSEKSCVGCHRELKRQGPSCNSCHVQ............................................................................................................................................................................. 110
28 -10.400d1w7oa_ a.138.1.1 (A:) Cytochrome c3 {Desulfovibrio baculatus (Desulfomicrobium baculatus) [TaxId: 899]}  ali model 3D-neighbors follow..  25  37...........................................................................................................................................SKHATVECAQCHHEADGGAVKKCTTSGCHDSLEFRDKANA-AYHTQCIDCHKALKKDKKPCGKCHTT............................................................................................................................................................................. 117
29 -10.100d2qwob_ a.2.3.1 (B:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]}  ali model 3D-neighbors follow..  20  36......WKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYAKMIFMELNDAWSEFENQ............................................................................................................................................................................................................................................................................................................................... 92
30 -9.520d2cvca_ a.138.1.1 (A:) 16-heme cytochrome c HmcA {Desulfovibrio vulgaris [TaxId: 881]}  ali model 3D-neighbors follow..  18  1.......................................EKRADLIEIGAMERFGKLDLPKVAFRHDQHTTAVTGMGKD--------------------------------------KSKDGKMSLKFMRLDDNSAAELKEIYHANCIGCHTDGKKTGPQDGECRSCHNPKPSAASS---DPQKNCGACHHVGKNKEDSCRACHGEKPVDKRPALD................................................................................................................................................................... 179
31 -9.320d1ft5a_ a.138.1.3 (A:) Cytochrome c554 {Nitrosomonas europaea [TaxId: 915]}  ali model 3D-neighbors follow..  26  1........................................................................................................................................ADAPFEGRKKCSSCHKAPAKDYTQDKDCVGCHVDGFTIESPKPMLTGVGCESCHGPGRN-EERCSACH............................................................................................................................................................................... 138
32 -9.150d3bxua_ a.138.1.1 (A:) automated matches {Geobacter sulfurreducens}  ali model 3D-neighbors follow..  26  26..................................................................................................................................................................DCAVCHGKGKIEGFGKEMAHGKSCKGCHEEMKKGPTKCGECH............................................................................................................................................................................... 69
33 -9.110d3ag7a1 a.2.3.0 (A:551-650) automated matches {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}  ali model 3D-neighbors follow..  19  38......WKPVPLMDMIEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQE-----AWDHFNTLG.................................................................................................................................................................................................................................................................................................................. 99
34 -9.000d2k2ca1 g.89.1.1 (A:1-82) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  18  21........................................................................................................................................EHYDRGCLLKAPCCD--------KLYTCRLCHDNNEDHQLDRFKVKEVQCINC-EKIQHAQQTCEECSTL............................................................................................................................................................................. 81
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 6 0 7   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Pio F, Pawlowski K, Godzik A. Saturated BLAST: an automated multiple intermediate sequence search used to detect distant homology. Bioinformatics. 2000 Dec;16(12):1105-10.