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Query: gi|16758998|ref|NP_454615.1| hypothetical protein (STY0005) [Salmonella enterica subsp. enterica serovar Typhi str. CT18], from S.typhi

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MLILISPAKTLDYQSPLATTRYTQPELLDHSQQLIQQARQLSAPQISRLMGISDKLADLNATRFHDWQPHFTPDNARQAILAFKGDVYTGLQAETFNDADFDFAQQHLRMLSGLYGVLRPLDLMQPYRLEMGIRLENPRGKDLYQFWGDIITDKLNEALEAQGDRVVVNLASEEYFKSVKPKKLDAELIKPVFLDEKNGKFKVVSFYAKKARGLMSRFIIENRLTKPEQLTAFDREGYFFDEETSTQDELVFKRYEQLast
1 -109.000[S] COG3022 Uncharacterized protein conserved in bacteria  ali follow..  85  1MLILISPAKTLDYQSPLTTTRYTLPELLDNSQQLIHEARKLTPPQISTLMRISDKLAGINAARFHDWQPDFTPENARQAILAFKGDVYTGLQAETFSEDDFDFAQQHLRMLSGLYGVLRPLDLMQPYRLEMGIRLENARGKDLYQFWGDIITNKLNEALAAQGDNVVINLASDEYFKSVKPKKLNAEIIKPVFLDEKNGKFKIISFYAKKARGLMSRFIIENRLTKPEQLTGFNSEGYFFDEASSSNGELVFKRYEQ 257
2 -5.960[O] COG3555 Aspartyl/asparaginyl beta-hydroxylase and related dioxygenases  ali follow..  10  52......................NRPYLAPQTFPELQVLVDNWQAIRSEALHLHDAGNIKRSEQYDDIGFNSFFKSGWKRFYLKWDEAHP--SAGQLCPQTTALLRQIPSVKAAMFAELPPGSKLVRHRFHLGLFTPNDPACFIEYHWRD-FDETFIHYAENATEHLFCDIERPLTQGW............................................................................... 227
3 -5.600[R] COG1090 Predicted nucleoside-diphosphate sugar epimerase  ali follow..  11  114......................................ERWTEAYKAEIFDSRKLGTEKLVEAIAKADRKPQVMISGSAIGYYPGDDFLAEVCQAWENAAHQVEQLGVRLVVFRIGIVLGADMLPPFKLFAGGPL---GSGEQWFSW-RDLIALIDKALTDSTLRGTYNATAPNPVKMKEFCHTLGKVL------ARPSWLPVPDIALELLLGEGAKLVLEGQEVLPGAISK---TDFQFQ................ 325
4 -5.350[J] COG1549 Queuine tRNA-ribosyltransferases, contain PUA domain  ali follow..  11  256...................HSMTRPEVIRWKKRVKERFEPPAGIDLLLIFPCSAK---------KPYSRSRSHMLFRKAMKDALGEKLHRV---------------HELIVTSPYGVVREWEWLAKYDIVVTGHWSDEE---------KFAGELLASTLDKYPDVPIIAHVEGGYKEAVRYAMELTNRVIFTAVGDSTTSKDSLKKLEATLREFDVRDVDKEYRRYRFYENIRKVFDYYFGLGAGNE.......... 453
5 -5.060[V] KOG1717 Dual specificity phosphatase  ali follow..  11  214.................................................................................LYLGCAKDSTNLDVLEEFGIKYI---LNVTPNLPNLFENAGEFKYKQI----PISDHWSQNLSQFFPEAIS--FIDEARGKNCGVLVHCLAG---------SRSVTVTVAYLMQKLNLSMNDAYDIVKMKKS-----NISPNFNFMGQLLDFE....................... 344
6 -4.910[S] COG4051 Uncharacterized protein conserved in archaea  ali follow..  11  9............................................................................VESAIESEQEFYRKIIEDNLASLKLAPAIGRIKVV------LRPEDSLFQMAIILRDVGTRV-----------TTIDIADVEAKPVAGEVMISIKKEQYIPEL--VKLWERYGKANISQPDRWTVSVSTDKPAEEAAFLKEMMVADPRHRLHEAIRATPEGFRVRYHLYKGNRFVFVASEE 176
7 -4.850[K] KOG4091 Transcription factor  ali follow..  11  1....MAWVLKMDEVIESGLVHDFDASLSGIGQELGAGAYSMSDVLALPIFKQEDSSLPLDGETMCAATSPAVKLHDETLTYLNQGQSYE-IRMLDNRKMGDMPEINGKLVKSII-------------RVVFHDRRLQYTEHQQLEGWKWN-DRLLDLDIPMSVGIIDTRTNPSQLNAV-----IQVHCISTEFTPRKHGG----------EKGVPFRIQVDTFKQNENQIKVFKPKG---DRKQKTDREKMEKRTAH 257
8 -4.810[S] COG4728 Uncharacterized protein conserved in bacteria  ali follow..  26  48..................................................................................YKGQNYRVLGVARHSET-----EEALVIYQALYG-VRPLEMF..................................................................................................................................... 88
9 -4.780[S] COG3671 Predicted membrane protein  ali follow..  18  12................................................................................................EDKILPAVVYGLYLLGFTNGLTFFVGLIVAYRDAAGPINASHYTFAIRTFWLAIAWFLIGLLLTIFGAPLSL......................................................................................... 85
10 -4.740[R] KOG2316 Predicted ATPase (PP-loop superfamily)  ali follow..  9  1MRVAALISGGKD-------SCYNMMQCIAAGHQIVALANLRPAENQVGSDELDSYMYQTVGHHAIDLYAEAMALPTIRGRSLDTRQVYTKCEGDEVEDELLKLVKEKEEVEGISVGAI----LSDYQRIRVENVCKRLNLQPLAYLWQRNQEDLLREMISSNIQAMIIKVAALGLDPDKHLGKTLDQMEPYLIELSEGGEYETFTLDCPLFKKKIISEVVIHSADAFAPVAYLRFLELHLEDKVSSVPD........ 256
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Grynberg M, Godzik A. NERD: a DNA processing-related domain present in the anthrax virulence plasmid, pXO1. Trends Biochem Sci. 2004 Mar;29(3):106-10.