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Query: gi|16759000|ref|NP_454617.1| transaldolase B (STY0007) [Salmonella enterica subsp. enterica serovar Typhi str. CT18], from S.typhi

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MTDKLTSLRQFTTVVADTGDIAAMKLYQPQDATTNPSLILNAAQIPEYRKLIDDAVAWAKQQSSDRAQQVVDATDKLAVNIGLEILKLVPGRISTEVDARLSYDTEASIAKAKRIIKLYNDAGISNDRILIKLASTWQGIRAAEQLEKEGINCNLTLLFSFAQARACAEAGVYLISPFVGRILDWYKANTDKKDYAPAEDPGVVSVTEIYEYYKQHGYETVVMGASFRNVGEILELAGCDRLTIAPALLKELAESEGAIERKLSFSGEVKARPERITEAEFLWQHHQDPMAVDKLADGIRKFAVDQEKLEKMIGDLLLast
1 -104.000[G] COG0176 Transaldolase  ali follow..  87  1MTDKLTSLRQITTVVADTGDIAAMKLYQPQDATTNPSIILNAAQIPEYRKLIDEAIAWAREQSSDHAQQIVDATDKLAVNIGLEILKLIPGRISTEVDARLSYDTVASVAKAKRLIKLYNEAGISNDRILIKLASTWQGIRAAEQLEKEGINCNLTLLFSFAQARACAEAGVFLISPFVGRILDWYKANGDQKEFAPSEDPGVVSVTEIYQYYKKHGYKTVVMGASFRNLGEIIELAGCDRLTIAPSLLKELAESEGPVERKLAYTGEIQAKPAPLTEAEFYWQHNQDPMAVDKLADGIRKFAIDQGKLEKMISDLL 317
2 -99.600[G] KOG2772 Transaldolase  ali follow..  55  1M-SVLEQLKGASVVVADTGDFNAIKEFQPTDATTNPSLILAASKMEQYAALIDQSVAYAKEHASGHQEVLQAAMDRLFVVFGKEILKTIPGRVSTEVDARLSFDTQASIDRALGLIAQYEKEGISKDRILIKLASTWEGIRAAKFLEKHGIHCNMTLLFNFEQAVACAESGVTLISPFVGRIMDWFVKNTDQKAYTRKDDPGVVSVTRIFNYYKKYDYKTQVMAASFRNTEEIKGLVGCDLLTISPALLKQLAAETELAPVVLSTSHAKTLDLPKVDEKAFRWALNEDAMATEKLAEGIRNFAKDARTLEKLIEAKI 319
3 -7.870[H] COG0854 Pyridoxal phosphate biosynthesis protein  ali follow..  12  4..............................GVNIDHIATVRNARGTTYPSPVEAALVAETHGADLITMHLREDRRHIKDADVFAVKNAIRTRLNLEMAL-----TEEMLENALKV----------MPEDVCIVPTTEGGLGFTKILTDAGIRVSLFIDADDRQIQAARDVGAPVVELHTGAYADARSHA--------EQIRQFERIQNGAHFAGDLGLVVNA-GLTIHNVTPIAQILAIRELNIGHSLIAQAL................................................................ 220
4 -6.080[G] COG0574 Phosphoenolpyruvate synthase/pyruvate phosphate dikinase  ali follow..  13  673...........................................................................................................TPDEGRKVIAEMAKHGLKQGKVMCELPSN----EFSEVFDGFSIGSN-----DLTQLTLGLDRDSSLVAHLFDERNLGV----------------KRMVKMAIETAKANGRKIGICGQAPSDYPEFAEFLGIDSISLNPDSVLKTVL............................................................... 808
5 -5.650[S] COG4274 Uncharacterized conserved protein  ali follow..  11  60.........................................................................................QGAKSVRDSPKRLDAARKQLGDGGSFKAFYLTMGEYDMVAVVEAPDDAVLARFSLMLAAAGVRTRTLKAFPEFAYREIISS................................................................................................................................................... 142
6 -5.590[KT] COG4565 Response regulator of citrate/malate metabolism  ali follow..  12  8............................................................................................LIVEDETSIADVHSFYLKQAQSINEARNMVRILKPKLINYLPDG-RGIEFLKELTHQPQAPDVIFITAASDMETVREAVRCGVFDYL.......................................................................................................................................... 105
7 -5.570[R] COG2108 Uncharacterized conserved protein related to pyruvate formate-lyase activating enzyme  ali follow..  15  55...........................................................................................PLSPWRRKDVVYANERPVRSEKDIIEEAKIQDARGAGILARLSRTVEYIRLLKEEFGKKFHIHLYILASEEALEKLYDAGLDEIRFHPDLFQP----------NSKFFEREIENMKKAFDFGWDVGGEVPAVPGFEDRIKWFASLLGAKFLNI......................................................................... 208
8 -5.540[E] COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog  ali follow..  7  6IHRDAVIIDAVAPLLEKKRYVESYKAGGVTCVAPTVNAGEGSPAAALKEIGSWLHFIRSRKD----------------LRLVQKASDIDAAKRDGHVGILFHFQGTGPFETDLNLVEAFQALGVRMVQLTYN--LSRFGKALVRRLNENRVIVDCTALSLTTRPAVFSHSNSAAVFPSKRNIQD-------DQAKAAAGTGGLVAVTAVPQFVVPTEGDAASLDDLIAHIDHFVALIGIDHVGL......................................................................... 251
9 -5.270[H] COG0132 Dethiobiotin synthetase  ali follow..  7  1......................MLTRLFVTGTDTAKTVVSRALLQALSQNGRTAVGYKPVATESKETSEGLRNQDALILQASSSIELNYQEVNPYPLQGDVIHACTDTLINYEKMTEGLQCLSAKADTVIVEVMMNDQGLLTAQAIINDGLPLLGWVANRINPGLAHYAETIAMLRDRLA......................................................................................................................................... 193
10 -5.150[O] KOG2014 SMT3/SUMO-activating complex, AOS1/RAD31 component  ali follow..  10  3.................................................................................................GEELTEQETALYDRQIRVWGANAQRRLTKAHILV-SGIKGTVAEFCKNIVLAGVALNANFLIPPDENVYSGKTVAEICSDSLKDFNP..................................................................................................................................... 102
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 9 4 0   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Jaroszewski L, Godzik A. Tolerating some redundancy significantly speeds up clustering of large protein databases. Bioinformatics. 2002 Jan;18(1):77-82.