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Query: gi|16759011|ref|NP_454628.1| putative chitinase (STY0018) [Salmonella enterica subsp. enterica serovar Typhi str. CT18], from S.typhi

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MATSKLIQGDTITETTHAANGFDPATSDDKISYTSARVAKPVYNKYKNSTTKPKVFGYYTDWSQYDSRLQGNMSQPGRGCDLTNVSPTAYDKLIFGFVGITGFRKIDKEDRDVVAEAAALCGKVKYEPTFLDPWGDFQSYINLGFETSGWDVDPKTVTQANAKGMLGALRDMQAKAKAAGHTLALSMSIGGWSMSNGFHETAASDSSRKTFAKGVVKLFKQFPMFSEVDIDWEYPNDEGAGNPFGAEDGANYALLIAELRKQLDSAGLSNVKISIAASAVTTIFDHAKVKDLLAAGLYGINLMTYDFFGTPWAETLGHHTNRKALEEGGWAVETIVDHLLAEGFSADRINIGYAGYTRNARQVEIESLSPLKGSYNPGSGDTTGSFESGTSEWYDVIYSYLDLENQKGRNGFNVYTDQVADADYLYSPESKLFLSLDTPRTVKAKGEYAAKLGLGGVFTWTIDQDNGVLVNAVREGLGYEIESEVIDMEPFYFEGINVEKDDEQSDSDDAQKVNHAPKAAIELMVVGGSTVQLSGAGSSDEDNDELSFSWGVPSQIDVADKTAEIIEVVVPEVSEKTAFQFTLFVRDCYNEPSSQQRFVLTAVPALSQVQPEPEEEEEIIVPVPDEEEETTPAEDDTSADDKTSPYAQWDASTVYGANWGSFEIVSWKGHNYQVKWWSMGNQPDLNCGVGGAWTDLGAYLast
1 -123.000[G] COG3325 Chitinase  ali follow..  97  1MATSKLIQGDTITETTHAANGFDPATSDDKISYTSARVAKPVYNKYKNSTTKPKVFGYYTDWSQYDSRLQGNMSQPGRGYDLTKVSPTAYDKLIFGFVGITGFRKIDTEDRDVVAEAAALCGKVKYEPTFLDPWGDFQSYINLGFDVSGWDVDPKTVTQSNAKGLLGALRDMQAKAKAAGHTLALSMSIGGWSMSNGFHETAASDSSRKIFAKGVVKLFKQFPMFSEVDIDWEYPNNEGAGNPFGPEDGANYALLIAELRKQLDSAGLSNVKISIAASAVTTIFDYAKVKDLMAAGLYGINLMTYDFFGTPWAETLGHHTNRKALEEGGWAVETIVDHLLAEGFSADRINIGYAGYTRNARQVEIESLSPLKGSYNPGSGPTTGSFESGTSEWYDVIYSYLDLENQKGRNGFNVYTDQVADADYLYSPESKLFLSLDTPRTVKAKGEYAAKLGLGGVFTWTIDQDNGVLVNAVREGLGYEIESEVIDMEPFYFEGINVEKDEEQSDSDDAQK........................................................................................................................................................................................... 512
2 -38.500[G] COG3469 Chitinase  ali follow..  14  2..........NGKQVMVGGLSLLLVGTELGAFGSTAQAATDDASVMPDISNKQVLVGYWHSWK---SSGKDGYQQGTSADIALKDTPKAYNVVDVSFMKGDGVNRIPTFKPVGIND--------------------------------------------------SDFRAQVGALNKEG--RAVLLALGGADGH-----VELKAGDEQAFANEIIRQVETYG-FDGLDIDLEQSAITAG------DNKTVIPAALKIVKDHYKAQG-KNFLITMAPEFPYLKPGSAYYLTSLANYYDYIAPQLYNQGGD-GVWVDETNQWIAQNNDTLYMADSFINGTGYLKIPANKFVFGLPANVDA------------------------------------------------AATGY-----------------------VKDPQIVQNVFNRLQAKPVKGVMTWSVNWDAGKNSAGVA................................................................................................................................................................................................................................. 336
3 -31.700[R] COG3858 Predicted glycosyl hydrolase  ali follow..  7.............................TLNEPSNAQFAEYATEVSPGEWRILNPDAWKNWGG----------NQKNFWLAFMNHHDKIYGVGLHDFGVNADGTIYSYKAGEGY----------------------------------------PVLNEDETAIRWWMRDSLRFLVDHYPNIKWSLQMVCFDPSRVEPILDNVNGAQDTFVRQLKKIAELYLNIKGIEMDFEK-----TSRPRSAQEPEKYRDLLRRVKDEVCR--PLGLEIRVNLHAMTGEYNAWTNYSTIAEALDEYQIMSYDFSAG--NTAPGPSTPV---------LLEVLDHVRNV-LPPEKTFIGNAAYGRRWSLNRDRLGTAIA-----------------YWQLLQWQNGLFKHNAGQRNDQGEFIWFDQSFIPYCFHDEESEYTFLHCYDRFQARFARLLPYNNSQV-VYRGTYRNAEYITSYSK----HQRAKFTGIQRVLTEATSTSGHISDAHSVWEPKDDLPGYTFYGYNTLPGQYLYDEATNSCVRASGAIGQDGRVTYSFSLSTPGTYRLIATVYFPYLNCRIPINVNGVDYVIGEDIPDWYCGTFSFSTSNTITVGVTQDSAQIMGFVICRDFEHGMSGGEVEYNVNLQVPKKRGSVLDGVVTKVDADMPDEVTLTAELIRRHPRPAI------FWEDFGPF 608
4 -13.200[R] COG3979 Uncharacterized protein contain chitin-binding domain type 3  ali follow..  11  82.................................................................................................................................................................................ANVKRVESILK------EADWDYLFPMRATYSNFLKAI-----------------KFPAVCGTYTDGRDSDAIC-----KTLATMFAHFAQETGGHESWRDIPE--------------------------QALVYLREVGWTEGQKGGYNGECNPDVWQGQTWPCG--KDKDGDFLSYFGRGAKQLSYNYN----GPFSDAMYGDVRPLLDKPELVADTWMNL--------ASAVFFFVYPQPPKPSMLHVIDGTWQPNDRDKANGLVSGFVTIQIINGGVECGGADENAQSLNRIAYYKEFANYLKVPVPADEVLGTTEPDVTPTPAPVTDENVAPVARIAGPVGAVEAGSPVSLSAEGSTDANGDKLTYTWMSQDGKTLSGQDKAVVIFNAPDVTQNTQYVVNLTVSDGTLSSTAVYTLNVKAKAAAADDEDKTTSYPAWSSSQK----------------------------------WNPGDIVNSNGALYQCKPFPEGSEPGVGIAWADAWNAL... 587
5 -8.440[R] KOG2331 Predicted glycosylhydrolase  ali follow..  11  2.......................PKSNDDDVAQSEAVPLLDLVKPSLPISFPIKALQDLKSRS--------YFDSFHFQFNRSTVPFRR-----SDCLPNRPRVLVCHDMKGGYVDDKWVQGCENEAGFAIWHWYLMDIFVYFSHSLVTIPPPCWTNT-------------------AHRHGVKVLFITEWDEGKATCKEMLATKESAQMYAERLAELATALG-FDGWLINIE--------NDIDEEQIPNMKEFVSHLKKVLHLSTPG------------------------------ALVIWYD-RGNQWQDQLTELNKPFFDLCDGIFMNYPNLSAEVAGDRKFDVYMGIDVFGRGSFGGGQWTVNAALDLLKR-NNVSAAIFAPGWVYETAQPPNFHTAQNK-VEKSWGIVQTYPQVLPFYFNQGFGYHVSLEGRQLSDSPWYNISCQSLQPLLEFNEDNKD......................................................................................................................................................................................................................................... 390
6 -8.070[S] COG1306 Uncharacterized conserved protein  ali follow..  298........................................................................................................................IKDSGMNAVVID--KDDNGNLTYSSKLSLPNKLRSVKNFIDVPYILKKAKEL-KLYYYDNFKHALWNKKTNWAHLIKKVDSSGKYVQVEHWVDIFSPATWEYNIVDEIQFDYRFPSDGPVSLRMNKYEMQPVDALESFLIMAREQLYVPISVDIYGYNGWFPTNSIGQNISMLSDYVDVISPMFYPSH-----------------------------------------------YTDDFLPSNFYYTKRAYRIYKEGSDRALAFSLDGVV-----IRPYVQ--------AFLLGKERLVDDEI-------------YLEYLKFQLKGIKESFGSGFSLWNASNVYYMIKGSLKE................................................................................................................................................................................................................................ 609
7 -7.860[O] COG5077 Ubiquitin carboxyl-terminal hydrolase  ali follow..  10  211...............................................................................................GYVGLKNQGAT----------------------------NSLLQSLYIIHAFRRIVYQIPTDSPQGKDSIAYALQRCFYNLQFMNEPVSTLTKSFGWDSLDSFMQ-----HDVQEFNRVLQDNLER-NLFVGVNVNFE------------SARSEDYWDIMKNLEDSFRSYIQVETLCYFADTYGFQEAKKGVIFESFPPIL-HLQLKRFEY-----DFERDMMIKINDRYEFPLEFD--AKAFLSPEADQSQ-LYGVLVH--------------------------SGDLHNG---------HYY---------------------ALLKTEKDGPWYKYDDTRVTRATLREVLEENYGGMLLYLRKDKLDELMNPVSADEIPEHLKEALNPS.................................................................................................................................................................................................................. 554
8 -7.790[R] KOG2244 Highly conserved protein containing a thioredoxin domain  ali follow..  14  107................................................................................................................................................................................KARSENKIIFLSVG-W--HESFENPETAAIMNENFVNIKVDREER-------DIDWPMPTLA-AGTYFPPKSRPSFNTVLKSIARKWETDKES--KNQDASAVPEAAFGAGSAIEKLSEAINVH-RQRFDQTHGGFGSEPKFPEVVTKDPDVLDMVIETLTQIGKGGI--DHIFGGFARYAQDWHNVH---------------------FEKMLYDQGQLMMAFANAYKVTRDEIYLRYADKIHK--YLLRHPLGGFYAGEDADSLPTHED--KVKVEGAFYAWTWDE........................................................................................................................................................................................................................................... 420
9 -6.740[T] KOG4658 Apoptotic ATPase  ali follow..  10  35........................RALQREMEDLRAIQHEVQNKVARDEARHQRRLEAVQVW----DRVNSVDIECKDLLSVTPVELQKLCLCGLCSKYVCSSYKYGKKVFLLLEEVKKLNSEGNFDEVSQPP-----------------RSEVEERPTQPTIGQEDMLEKAWNRLMEDGVGIMGLHGMGG-EIGGTFDIVIWIVVSKGVMISKLQEDIAE-----HLCDDWKNKNESDKATDIHRVKGKRFVLMLDDIWEKVDEVNKCKVAFTTRSREVCGEMGDHKPMQ--------VNCLEPEDAWELFKNKVGDNTLSSDPVIVELAREVAQK----RGLPLALNVIGETMSSKT----------------------MVQEWEHAIHVFNTSAAEFSDMQNKI-KYSYDSLGDEHIKSCFLYEIYNEKLIDYQVIKRARNKGYAMLGTLTRANLLTKVGTYYCVMHDVVRE................................................................................................................................................................................................................................ 477
10 -6.650[T] KOG3759 Uncharacterized RUN domain protein  ali follow..  4..............................................................................KMAEAQETKDSCS---------TIEGQLPAGPVRAEDEEEEVEVEQEQQELLSERWSPLGANYD-ASSGVDCELEPGLEKSEARRGSTGSELARLRSIEEEQELLTSLLAL-----TSHFAHV-APAEERDQLLRDLEDFA-----FQGIDAVQSKESHPDKPASDGEKDHGPDSQLIQQLKSQLTELEQIAYEAGEPLPQHVLLEKQKFILDELRAKLN-LQVEQHEL-------------PALSTEQLRHQVDNAIGEFVGPLKMKEQLV............................................................................................................................................................................................................................................................................................................................................................. 257

FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 1 3 9   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Jaroszewski L, Bierzynski A, Godzik A. Multiple model approach--dealing with alignment ambiguities in protein modeling. Pac Symp Biocomput. 1997;:328-39.