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Query: d2itka2 d.26.1.1 (A:51-163) Mitotic rotamase PIN1, domain 2 {Human (Homo sapiens) [TaxId: 9606]}, from SCOP207

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst EPARVRCSHLLVKHSQSRRPSSWRQEKITRTKEEALELINGYIQKIKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRTELast
1 -75.700[O] KOG3259 Peptidyl-prolyl cis-trans isomerase  ali follow..  100  51EPARVRCSHLLVKHSQSRRPSSWRQEKITRTKEEALELINGYIQKIKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRTE 163
2 -32.100[O] COG0760 Parvulin-like peptidyl-prolyl isomerase  ali follow..  19  267QPERRNYSVIQF---------------------KTEVEAKAALDELKKG-ADFAVIAKEKSTDISRNNGGELGWLEPETTPDEVK-AANLSEKGQLSDVIKSSVGYLIVRLND 357
3 -5.860[S] COG2164 Uncharacterized conserved protein  ali follow..  13  3..ERGVEMRLRIRFESAECEVELYEEWAPETVRAIADALPIKSTANRWGDEIYFTTQVAEENSKDVVELGDVAYWIPGKAICLFRPASAVNVIGRIVNSMEG........... 116
4 -5.510[E] COG0549 Carbamate kinase  ali follow..  14  219..EMIDADMLIILTAVEKVAINFGKENEQWLDRLSLSDAERFIEE---------------------------GHFAKGSMLPKVEAAASFARSRKAKEGIEGKTGTVICQ... 310
5 -5.130[S] COG5451 Predicted secreted protein  ali follow..  12  98..EILGAVQYLRTLCPSSGPEDWRKSMSALLAADTASEPERRQRMTAAFNRGYRSFAAIHTSCTRAAIMAEENYRNEGA---------------TLAQEIASRFG........ 185
6 -5.110[S] COG4925 Uncharacterized conserved protein  ali follow..  10  183QEEGETKMRISIQANGETTIYELNDGKAAKELYEQLPLTIDVED---SNNEKIFYPPKKLDTTNTPMQFGTLAYYAPWEDVVMFYDRF--YELGTVISGGEH........... 289
7 -5.030[A] COG5182 Splicing factor 3b, subunit 2  ali follow..  13  252.PSYIRATGI-----VQMRNAVHENEADMPLRQKMRERVQPKMGKLDIDYQKLHDAFFRYQTKPVLTGFGECYFEGK-----ELEADVKEKRPGDISEELREALGI....... 346
8 -4.910[J] COG0013 Alanyl-tRNA synthetase  ali follow..  14  568......ATHLLALQAGSLNEVEFLRFDFTHFAQVTKEELAEIERQVNEVIWQSLKVETVETDIATAKEMGAMALFG-----EKYGKNVRVVKIGDYS--IELCGGTHTQTTSE 678
9 -4.800[J] COG0359 Ribosomal protein L9  ali follow..  11  50......ARNYLIPKGLGVVATPGILRQVEQRRLKELERLKAEKDAAEARKVALETIGRFVIKKQVGEAEAIFGTVTTQEVADAVEAATQSLDRRGISLPDIHKTGFYQAQI.. 155
10 -4.780[O] KOG0549 FKBP-type peptidyl-prolyl cis-trans isomerase  ali follow..  12  1....MKTAVIVGLLCLLAIAYAADEQKIDKLQIGVKKRAENCVQKSRKGDQ--GTLLDGTEFDSSRTRNEEFTFLGQGNVIKGWDQGLLNMCVGERRILIPPHLGY....... 108
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Jaroszewski L, Godzik A. Sequence clustering strategies improve remote homology recognitions while reducing search times. Protein Eng. 2002 Aug;15(8):643-9.