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current user: public |
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Query: d3etja1 b.84.2.1 (A:277-355) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), C-domain {Escherichia coli [TaxId: 562]}, from SCOP207 |
. 10 . 20 . 30 . 40 . 50 . 60 . 70 . | |||||||
# | Score | Template | Links and tools | %id | First | NNPSVMINLIGSDVNYDWLKLPLVHLHWYDKEVRPGRKVGHLNLTDSDTSRLTATLEALIPLLPPEYASGVIWAQSKFG | Last |
1 | -23.700 | [F] COG0026 Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) | ali follow.. | 41 | 310 | HSDCVMTNLIGDDINDAWLSKKDCLVHLYGKEARPGRKMGHVTELLHTGKA............................ | 363 |
2 | -21.800 | [F] COG0027 Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) | ali follow.. | 18 | 318 | ISPSASKAIVVEGKSAEVLAEPHTNLRLFGKEVDGHRRMGVILARDISVEKALEKARRAYDKLEIA............. | 392 |
3 | -15.400 | [F] KOG2835 Phosphoribosylamidoimidazole-succinocarboxamide synthase | ali follow.. | 25 | 314 | .TNAIMLNVLGDKHTKRALATPGSSVYLYGKESRPNRKVGHINIIASSMAECEQRLNYITGRTDIPIKISVAQKLDL.. | 397 |
4 | -6.680 | [R] KOG3375 Phosphoprotein/predicted coiled-coil protein | ali follow.. | 10 | 126 | ........................KMHLAGKTEQAKADLARLAIIRKQREEAARKKEEERKAKDDATLSGKRMQSLSLN | 180 |
5 | -5.870 | [R] COG3481 Predicted HD-superfamily hydrolase | ali follow.. | 25 | 185 | ..................LLYAGVILHDLGK-TVEGNLLGHISIMVTELSKAAEELQ...................... | 234 |
6 | -5.830 | [J] KOG3353 60S ribosomal protein L22 | ali follow.. | 4 | 133 | ............................HGRINPYMSSPCHIEMILTEKEQIVPKPEEEVAQKKKISQKKLKKQKLM.. | 181 |
7 | -5.830 | [Q] COG3527 Alpha-acetolactate decarboxylase | ali follow.. | 17 | 154 | .......AIVGTPELFHGVGSAGFHIHFADDERAYG---GHVDFEVDDVVVEIQNFETFQQHFPVNNET.......... | 215 |
8 | -5.760 | [NU] COG3168 Tfp pilus assembly protein PilP | ali follow.. | 11 | 104 | .....MVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPD..................... | 156 |
9 | -5.580 | [J] COG0091 Ribosomal protein L22 | ali follow.. | 2 | 133 | ............................HGRVTAYLSSPSHIEIIVAEEEEAVPKANDTVSRVSLKQGAKARNLAAR.. | 181 |
10 | -5.490 | [A] COG5176 Splicing factor (branch point binding protein) | ali follow.. | 6 | 162 | ......VNFVGGRTLRKLQEDSNCKIAIRGRGSVKEGKNAHCLIIADSEDKIQKGIKVCQNIVI............... | 239 |
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9. Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018. Friedberg I, Nika K, Tautz L, Saito K, Cerignoli F, Friedberg I, Godzik A, Mustelin T. Identification and characterization of DUSP27, a novel dual-specific protein phosphatase. FEBS Lett. 2007 May 29;581(13):2527-33. Epub 2007 Apr 30. |