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current user: public |
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Query: d1gcva_ a.1.1.2 (A:) Hemoglobin, alpha-chain {Houndshark (Mustelus griseus) [TaxId: 89020]}, from SCOP207 |
. 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 . 140 | |||||||
# | Score | Template | Links and tools | %id | First | AFTACEKQTIGKIAQVLAKSPEAYGAECLARLFVTHPGSKSYFEYKDYSAAGAKVQVHGGKVIRAVVKAAEHVDDLHSHLETLALTHGKKLLVDPQNFPMLSECIIVTLATHLTEFSPDTHCAVDKLLSAICQELSSRYR | Last |
1 | -37.600 | IDP01484 nitric oxide dioxygenase VCA0183 [Vibrio cholerae O1 biovar El Tor str. N16961] | ali follow.. | 18 | 2 | .LTQEHINIIKSTIPLLESAGPALTQHFYQRMFSHNPELKHIFNMTHQKTGRQSVAL--FEAIAAYAKHIDNLAALTSAVERIAHKHT-SFNIQPEHYQIVGHHLLETLRELAPDFTQPVEEAWTAAYFFLAQVFIDREG | 138 |
2 | -36.200 | IDP00562 gene: hmp; nitric oxide dioxygenase YPO2908 [Yersinia pestis CO92] | ali follow.. | 20 | 2 | .LDTQTIAIVKSTIPLLAATGPKLTAHFYERMFKHHPELKNIFNMSNQSSGDQREAL--FNAICAYATNIENLAALLPTVERIAQKHT-SLNIQPEHYPIVGEHLIATLDELFSP-GQAVLDAWAKAYGVLADVFIQRES | 136 |
3 | -36.100 | IDP00644 flavohemoprotein, putative SACOL0220 [Staphylococcus aureus subsp. aureus COL] | ali follow.. | 13 | 2 | .LTEQEKDIIKQTVPLLKEKGTEITSIFYPKMFKAHPELLNMFNQTNQKRGMQSSAL--AQAVMAAAVNIDNLSVIKPVIMPVAYKHC-ALQVYAEHYPIVGKNLLKAIQDVTGLENDPVIQAWAKAYGVIADVFIQIEK | 138 |
4 | -4.970 | IDP06380 gene: ORF46; ORF46 [Human herpesvirus 8] YP_001129398 [Human herpesvirus 8] | ali follow.. | 11 | 21 | ...DDRDLLLAPKWISF--SLSSFLKQKLLSLLRVYPPQDKLMWWSHCCDQDPYHKGQATGLAFSVDPQCQVPPSLRSIFRELEASVPNFSTPSHGCLDSWARQGVLLLNTVLGRAGSHEGLGWDWFTSFIISSISSKLE | 180 |
5 | -4.940 | IDP00753 glycosyl transferase, group 1 family protein SACOL0052 [Staphylococcus aureus subsp. aureus COL] | ali follow.. | 11 | 334 | ..PEKQLNHQIELVSKLIKEFPNIQLHLYVFLRGFRRNLSAEIQDAYMSLITSNMEGFNLGLLETITEGIPPVGNSKYGPSELILNNENGYLINKNDKDELYNRVRNLLLKHSKAFSSKVMKLWEDRFSTINS....... | 500 |
6 | -4.810 | IDP00776 glycosyl transferase, group 1 family protein SACOL0612 [Staphylococcus aureus subsp. aureus COL] | ali follow.. | 11 | 365 | ..............KKLNELIQKYGLENHVYLRGFLSNLDQEYSDAYLSLITSNMEGFSLALLESLAHGVPVISDIKYGPNELITSDFNGYLITKNDEDALFDKVKYVIDAKAQQYSKALIKQWDQFVRLI......... | 496 |
7 | -4.750 | IDP00834 glycosyl transferase, group 1 family protein SACOL2670 [Staphylococcus aureus subsp. aureus COL] | ali follow.. | 10 | 330 | ..NEKHIDWLVKAVIVAKRQVPELTFDIYGERLLGHVKLDEIYNDYELFLSASTSEGFGLTLMEAVGSGLGMIGNVNYGNPTFIRDGENGYLVPFDTDEDSVDDVIAKLAEVAQQFMTQIILKWETLVQEVLH....... | 501 |
8 | -4.700 | IDP95088 DNA-binding transcriptional activator AllS [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] YP_002918199 [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] | ali follow.. | 9 | 20 | ...SRAAEKLYKTTATISYRIKLLEDNTGVALF-------------SRTTRSVLLTPAGMHLLAQAREWLGWIDSMPGELQQINDGVERQVNIVVNNLMYDPQAIARLLAWLTQRYPFTQFHFSRQIYMGVWDTLLHD.. | 141 |
9 | -4.470 | IDP00775 glycosyl transferase, group 1 family protein SACOL0611 [Staphylococcus aureus subsp. aureus COL] | ali follow.. | 7 | 328 | ..ENKQIKHQIEVIKQLVTKHPNIQLNIYVKFHGFKTHINEEIAKAELMLSTSKMEGFGLAILESLSVGTPVISDVDYGPSELIQDGFNGYLVPQGDINQMVEKVDQLLNESAQQYNATISTKWQNILN........... | 490 |
10 | -4.360 | IDP95132 glucuronic acid transferase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] YP_001337621 [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] | ali follow.. | 10 | 226 | AIAPTDRYLL-KDQPRYQALAKSLNCEARVRFFGMQSETLPFYQMADGLLLPTLYDPFPNVILEAMACGLPVITTTGCGGAEFIVDGHNGYVCDALDIPALQQAVMALPARALGSAEGGHARERIMACTSLSTQLLSLYQ | 371 |
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9. Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018. Jaroszewski L, Rychlewski L, Zhang B, Godzik A. Fold prediction by a hierarchy of sequence, threading, and modeling methods. Protein Sci. 1998 Jun;7(6):1431-40. |