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Query: d1jl7a_ a.1.1.2 (A:) Glycera globin {Marine bloodworm (Glycera dibranchiata) [TaxId: 6350]}, from SCOP207

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .
# Score Template Links and tools%idFirst GLSAAQRQVVASTWKDIAGADNGAGVGKECLSKFISAHPEMAAVFGFSGASDPGVAELGAKVLAQIGVAVSHLGDEGKMVAEMKAVGVRHKGYGNKHIKAEYFEPLGASLLSAMEHRIGGKMNAAAKDAWAAAYGDISGALISGLQSLast
1 -48.200IDP01484 nitric oxide dioxygenase VCA0183 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  15  2.LTQEHINIIKSTIPLLE--SAGPALTQHFYQRMFSHNPELKHIFNMTHQKTGR---QSVALFEAIAAYAKHIDNLAALTSAVERIAHKHTSFN---IQPEHYQIVGHHLLETLRELAPDAFTQPVEEAWTAAYFFLAQVFIDREGA 139
2 -46.200IDP00644 flavohemoprotein, putative SACOL0220 [Staphylococcus aureus subsp. aureus COL]  ali follow..  20  2.LTEQEKDIIKQTVPLLK--EKGTEITSIFYPKMFKAHPELLNMFNQTNQKRGM---QSSALAQAVMAAAVNIDNLSVIKPVIMPVAYKHCALQ---VYAEHYPIVGKNLLKAIQDVTGLEENDPVIQAWAKAYGVIADVFIQIEKE 139
3 -44.400IDP00562 gene: hmp; nitric oxide dioxygenase YPO2908 [Yersinia pestis CO92]  ali follow..  19  2.LDTQTIAIVKSTIPLLA--ATGPKLTAHFYERMFKHHPELKNIFNMSNQSSGD---QREALFNAICAYATNIENLAALLPTVERIAQKHTSLN---IQPEHYPIVGEHLIATLDELFSP--GQAVLDAWAKAYGVLADVFIQRESQ 137
4 -6.340IDP90885 dihydrofolate reductase [Vibrio cholerae O1 biovar eltor str. N16961] VC0440 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  12  43.........................MGRKTYQSIGRPLPGRHNIV----SRDASLQIEGVDVVTSIEAALAKAGEVDEVM------------IGGGSLYAACLPMAHKLYITEIHAKLGDTQFPEWGSDWLER.............. 137
5 -5.750IDP02284 gene: grpE; heat shock protein GrpE [Coxiella burnetii RSA 493] CBU_1293 [Coxiella burnetii RSA 493]  ali follow..  11  40..PHREGLEFPSREKLEGQLTRMERKVDEYKTQYLRAQAEMDNLRKRIEREKADIIKFGSK--QLITDLLPVADSLIHGLESPASEDPQVKSMGMSLTLDLLHNTLAKHGVQVINPNPGDPFDPALHEA.................. 166
6 -5.310IDP91562 gene: ECs0876; hypothetical protein [Escherichia coli O157:H7 str. Sakai] BAB34299 [Escherichia coli O157:H7 str. Sakai]  ali follow..  10  542TLKDKHYANLLTMLDLNDASESDKSKIFFCLSAVFANISH-SNVFNGIPDASKTLKRYAFALLAKAHSLDESMISNQTFNTYKTVLLDFNNLSNEEANQ----SSLYRDMVRYAQYRFSKVLSEWTPDAW................. 669
7 -5.200IDP90536 gene: purN; phosphoribosylglycinamide formyltransferase [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj0187c [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]  ali follow..  13  106................................KAINLHPSLLPLFKGAHAIKESYESDMKVAGVSVHWVSEELDGGMIIAQKAFEKRNLSFEEFEEKIHSLEHEILPLSVIEIFS................................ 188
8 -5.070IDP04011 stage II sporulation protein R [Clostridium perfringens ATCC 13124] CPF_2475 [Clostridium perfringens ATCC 13124]  ali follow..  7  42.......KLIRFHVLANSDSDIDQDLKLRVKDEVLKYISPILNESQSLEESREILKREDKNIIKIAEDYIKSQGFDYTVETTLTRENFPVKEYGNIVLPQGEY----EAYRILIGEGKGQNW-------WCVMFPPLC......... 161
9 -5.050IDP05072 gene: spoIIR; stage II sporulation protein [Clostridium difficile 630] CD3564 [Peptoclostridium difficile 630]  ali follow..  9  22.......KLIRFHVIANSNTDEDQELKLKVRDEVIKYLQPKLQNSKSIKESEAIIKKEYSSLEEISKNIILKNGYNYSVKVGIQYSNFPTKQYSNIVLPAGEY----KALKIIIGKGEGKNW-------WCVMFPPLC......... 141
10 -4.770IDP06282 gene: purN; phosphoribosylglycinamide formyltransferase [Streptococcus pneumoniae TIGR4] NP_344597 [Streptococcus pneumoniae TIGR4]  ali follow..  7  87......................GPTLLSAYEGRIVNIHPAYLPEFPGAHGIEDAWNAGVGQSGVTIHWVDSGVDTGQVIKQVRVPRLADDTI--EARIHEAEYRLYPEVVKALFTD............................... 181
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;