|
|
|
current user: public |
|
| Query: d1ngka_ a.1.1.1 (A:) Protozoan/bacterial hemoglobin {Mycobacterium tuberculosis, HbO [TaxId: 1773]}, from SCOP207 |
| . 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . | |||||||
| # | Score | Template | Links and tools | %id | First | KSFYDAVGGAKTFDAIVSRFYAQVAEDEVLRRVYPEDDLAGAEERLRMFLEQYWGGPRTYSEQRGHPRLRMRHAPFRISLIERDAWLRCMHTAVASIDSETLDDEHRRELLDYLEMAAHSLVNSPF | Last |
| 1 | -8.800 | IDP01484 nitric oxide dioxygenase VCA0183 [Vibrio cholerae O1 biovar El Tor str. N16961] | ali follow.. | 8 | 18 | .........ESAGPALTQHFYQRMSHNPELKHIFNMTHQKTGRQSVA--LFEAIAAYAKHIDNLAAERIAHKHTSFNIQPEHYQIVGHHLLETLRELAPDAFTQPVEEAWTAAYFFLAQVFIDR.. | 136 |
| 2 | -7.740 | IDP00644 flavohemoprotein, putative SACOL0220 [Staphylococcus aureus subsp. aureus COL] | ali follow.. | 9 | 18 | .........KEKGTEITSIFYPKMKAHPELLNMFNQTNQKRGMQSSA--LAQAVMAAAVNIDNLSVMPVAYKHCALQVYAEHYPIVGKNLLKAIQDVTGLEENDPVIQAWAKAYGVIADVFIQI.. | 136 |
| 3 | -6.760 | IDP00562 gene: hmp; nitric oxide dioxygenase YPO2908 [Yersinia pestis CO92] | ali follow.. | 11 | 18 | .........AATGPKLTAHFYERMKHHPELKNIFNMSNQSSGDQREA--LFNAICAYATNIENLAAERIAQKHTSLNIQPEHYPIVGEHLIATLDEL---SPGQAVLDAWAKAYGVLADVFIQR.. | 134 |
| 4 | -6.730 | IDP06490 gene: D19L; D19L [Monkeypox virus Zaire-96-I-16] NP_536449 [Monkeypox virus Zaire-96-I-16] | ali follow.. | 14 | 95 | .AILDKMTADIKLTDLVRHYFRYIEQDIPLGPLFKKID--SYRIRAINNYSKELGLATEYFNKYGHLMFYTLPIPYN................................................. | 168 |
| 5 | -6.230 | IDP00185 hypothetical protein YPO0639 [Yersinia pestis CO92] | ali follow.. | 9 | 362 | .............NGVRKKFLKDIANNPEVVKRLDAFDRSVLAKGVV---------PDGYQ----------VHHKLPLDDSGNNNFDNLV--LISTRPEHAAFTTTQKHITKNLTPTGTNIVLWPK | 453 |
| 6 | -5.130 | IDP01790 gene: obgE; GTPase ObgE [Francisella tularensis subsp. tularensis SCHU S4] FTT1731c [Francisella tularensis subsp. tularensis SCHU S4] | ali follow.. | 15 | 80 | ........GKAGEDLYLVVPVGTSVFDIDTNKKIGEVLQHGQTFKLVS------GGKRGIGNTHFKSSTNQAPRKFTLGEEGEYKEVRLELNLLADVALLGLPNAGKSTLIRSVSEATPKVADYPF | 191 |
| 7 | -4.940 | IDP01757 gene: obgE; GTPase ObgE [Yersinia pestis CO92] YPO3509 [Yersinia pestis CO92] | ali follow.. | 11 | 80 | ........GKRGKDITIKVPVGTRVLDQGTGEIVGDMVRHGQRLMVAK------GGFHGLGNSRFKSSVNRAPRQKTMGTEGETRELMLELLLLADVGMLGLPNAGKSTFIRAVSAAKPKVADYPF | 191 |
| 8 | -4.900 | IDP02063 gene: cgtA; GTP-binding protein, GTP1/Obg family [Coxiella burnetii RSA 493] CBU_0387 [Coxiella burnetii RSA 493] | ali follow.. | 14 | 80 | ........GKKGEDLIVPVPLGTTVYDKETSELIGDLIEAGDKLCVAR------GGRHGLGNTHFKSSTNRAPRRTTSGEEGEARELKLELKLLADVGLLGLPNAGKSTFIHAVSKATPKIADYPF | 191 |
| 9 | -4.890 | IDP00679 gene: obgE; GTPase ObgE SACOL1699 [Staphylococcus aureus subsp. aureus COL] | ali follow.. | 10 | 79 | ........GKNAEDLVLKVPPGTIIKNVETDEVLADLVEDGQRAVVAK------GGRGGRGNSRFATPRNPAPDFSEKGEPGEELDVSLELKLLADVGLVGFPSVGKSTLLSIVSKAKPKIGAYHF | 190 |
| 10 | -4.850 | IDP04532 gene: obgE; GTPase ObgE [Salmonella typhimurium LT2] STM3301_1_390 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] | ali follow.. | 10 | 80 | ........GKRGKDVTIKVPVGTRVIDQGTGETMGDMTKHGQRLLVAK------GGWHGLGNTRFKSSVNRTPRQKTNGTPGDKRDLLLELMLLADVGMLGMPNAGKSTFIRAVSAAKPKVADYPF | 191 |
FFAS is supported by the NIH grant R01-GM087218-01
|
|
|
Selected papers from Godzik Lab Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9. Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018. Jaroszewski L, Rychlewski L, Zhang B, Godzik A. Fold prediction by a hierarchy of sequence, threading, and modeling methods. Protein Sci. 1998 Jun;7(6):1431-40. |