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Query: d1x9fc_ a.1.1.2 (C:) Extracellular dodecameric hemoglobin (erythrocruorin), subunit III (globin C) {Common earthworm (Lumbricus terrestris) [TaxId: 6398]}, from SCOP207

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .
# Score Template Links and tools%idFirst HEHCCSEEDHRIVQKQWDILWRDTESSKIKIGFGRLLLTKLAKDIPEVNDLFKRVDIEHAEGPKFSAHALRILNGLDLAINLLDDPPALDAALDHLAHQHEVREGVQKAHFKKFGEILATGLPQVLDDYDALAWKSCLKGILTKISSRLLast
1 -36.200IDP01484 nitric oxide dioxygenase VCA0183 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  15  1...MLTQEHINIIKSTIPLLESAGP------ALTQHFYQRMFSHNPELKHIFNMTHQKTGR------QSVALFEAIAAYAKHIDNLAALTSAVERIAHKHTS-FNIQPEHYQIVGHHLLETLRELAPQPVEEAWTAAYFFLAQVFIDR. 136
2 -35.400IDP00562 gene: hmp; nitric oxide dioxygenase YPO2908 [Yersinia pestis CO92]  ali follow..  15  1...MLDTQTIAIVKSTIPLLAATGP------KLTAHFYERMFKHHPELKNIFNMSNQSSGD------QREALFNAICAYATNIENLAALLPTVERIAQKHTS-LNIQPEHYPIVGEHLIATLDELFSQAVLDAWAKAYGVLADVFIQR. 134
3 -34.600IDP00644 flavohemoprotein, putative SACOL0220 [Staphylococcus aureus subsp. aureus COL]  ali follow..  15  1...MLTEQEKDIIKQTVPLLKEKGT------EITSIFYPKMFKAHPELLNMFNQTNQKRGM------QSSALAQAVMAAAVNIDNLSVIKPVIMPVAYKHCA-LQVYAEHYPIVGKNLLKAIQDVTGDPVIQAWAKAYGVIADVFIQI. 136
4 -5.300IDP00190 putative lipoprotein YPO0927 [Yersinia pestis CO92]  ali follow..  14  44DVKALSEKSCVEMDQKAQIASADSQYGKRMAKIAA----ALGDNINGTPANYKVYVTKDVNAWAMANGCIRVYSGLMDMMTDNEVEGVVGHEMGHVALGHTRK.............................................. 142
5 -5.300IDP93895 transcriptional regulator YbtA [Yersinia enterocolitica subsp. enterocolitica 8081] YP_001006814 [Yersinia enterocolitica subsp. enterocolitica 8081]  ali follow..  13  207LSCHFNPMERQKLLRAKDLLLADLTQAPGVAELARESGLSVLKIKRGFRVLFNNSVYGLFQAERMQ-EARRRLANGNTSVMTVAADLGYAN-ASHFSAAFQKQFGVTPSTFK..................................... 316
6 -5.160IDP06391 gene: ORF31; ORF31 [Human herpesvirus 8] YP_001129384 [Human herpesvirus 8]  ali follow..  7  111.GDGVTDTISAIIDETFGECLPVLGEAQGGYALVCSMYLHVIVSIYSTKTVYNSMLFKCTKNKKYDCIAKRVRTKWMRMLSTKDT................................................................ 194
7 -5.110IDP01682 D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthracis str. `Ames Ancestor`] GBAA5104 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  13  93.....IFDRNLRLSKDVVKKFLNVVDAAGKDGVQHFLMNSGYRDFKEQSKLYKEMGSDYALPAGYSEHNLGLSLDVGSTQKKMEKAPEIEENVWKHGKSHITGIQYEPWHIRYVGLPHSAIMQK......................... 222
8 -5.090IDP06047 hypothetical protein jhp0257 [Helicobacter pylori J99] NP_222978 [Helicobacter pylori J99]  ali follow..  10  31...........LIGGLVWFMHNAIKRAQDNASSLTIQERLYRHEISRLQVKTDETLKLIKEAKKRLNYNDDIRDVLQGLLNIVPDLITINSI--EIDQQSVVVSGKTPSK-EAFYFLFQNKLNPMFDYSLSDGWFNFVST......... 162
9 -5.090IDP04507 pyridoxamine 5`-phosphate oxidase [Vibrio cholerae O1 biovar eltor str. N16961] VCA1079 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  9  86....IAHNNKISLHFPWHPLERQVHITGVAEKLTAMENMKYFMSRP---------------------KESQIAAIASHQSSRISARGVLEGKYLELKQKFANGEIPVPSFWGGY----------RIRPESLEFWQGGEHRLHDRFL... 196
10 -5.080IDP05228 gene: dltD; DltD protein for D-alanine esterification of lipoteichoic acid and wall teichoic acid [Listeria monocytogenes EGD-e] lmo0971 [Listeria monocytogenes EGD-e]  ali follow..  8  249DLRYDQSPEFADLQLLMDAFKKAGADV-------------IFINPPINGKWIDYIGMDKQGLDDYYAKTKEQIESQGFRYYSLEEYQNDAFFLED--PIHLSWRGWVK-----IDQVLADFVKEPIQTNYFKEHPE............. 372
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Rychlewski L, Zhang B, Godzik A. Functional insights from structural predictions: analysis of the Escherichia coli genome. Protein Sci. 1999 Mar;8(3):614-24.