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Query: d2gkma_ a.1.1.1 (A:) Protozoan/bacterial hemoglobin {Mycobacterium tuberculosis, HbN [TaxId: 1773]}, from SCOP207

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst GLLSRLRKREPISIYDKIGGHEAIEVVVEDFFVRVLADDQLSAFFSGTNMSRLKGKQVEFFAAALGGPEPYTGAPMKQVHQGRGITMHHFSLVAGHLADALTAAGVPSETITEILGVIAPLAVDVTSLast
1 -7.700IDP00562 gene: hmp; nitric oxide dioxygenase YPO2908 [Yersinia pestis CO92]  ali follow..  14  1.MLDTQTIAIVKSTIPLL--AATGPKLTAHFYERMFKHPELKNIFNGDQREALFNAICAYATNIENLAALLP-ERIAQKHTSLNIQPEHYPIVGEHLIATLDEFSPGQAVLDAWAKAYGVLADVFIQ 133
2 -7.550IDP01484 nitric oxide dioxygenase VCA0183 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  15  1.MLTQEHINIIKSTIPLL--ESAGPALTQHFYQRMFSNPELKHIFNMTHQKTGRQSVALFYAKHIDNLAALTSERIAHKHTSFNIQPEHYQIVGHHLLETLRELAFTQPVEEAWTAAYFFLAQVFID 135
3 -6.910IDP06490 gene: D19L; D19L [Monkeypox virus Zaire-96-I-16] NP_536449 [Monkeypox virus Zaire-96-I-16]  ali follow..  16  84.LTPTPKPAVRFAILDKMTADIKLTDLVRHYFRYIEQDIPLGPLFKKID--------------------SYRIRAINNYSKELGLATEYFNKYGHLMFYTL.......................... 163
4 -6.520IDP00644 flavohemoprotein, putative SACOL0220 [Staphylococcus aureus subsp. aureus COL]  ali follow..  12  1.MLTEQEKDIIKQTVPLL--KEKGTEITSIFYPKMFKHPELLNMFNNQKRGMQSSALAQAVMAAAVNIDNLSVMPVAYKHCALQVYAEHYPIVGKNLLKAIQDVEENDPVIQAWAKAYGVIADVFIQ 135
5 -5.080IDP02286 gene: dacD; D-alanyl-D-alanine carboxypeptidase (penicillin binding protein) family protein [Francisella tularensis subsp. tularensis SCHU S4] FTT1029 [Francisella tularensis subsp. tularensis SCHU S4]  ali follow..  19  108.ISENAASTGGSKMYVKAGAKVSVRNLVTGMDVVSGNDATIA------------------LAEYIGGTTQAFTDLMNQTAKAIGMNNTHF----------ANPDGLPGGEQYTTAHDMALLARSYIY 205
6 -4.970IDP90201 gene: CPXV215 CDS; CPXV215 Protein AAM13653.1 [Cowpox virus (Brighton Red)]  ali follow..  5  54TMFTTPMIARDLVTRVNLQMKDAVKNIVQYLYNRHISSMNVIDVLKCADIDDLVADCESYIKDYTNHDTCICMYHKLYEMIHIPIVKYIKRMLMSNIPTLITTDAFKKTVFEILFDIIST....... 178
7 -4.790IDP02523 gene: dacF; D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis str. `Ames Ancestor`] GBAA4297 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  14  98.ASEHAASMGGSQIFLEPGEEMTVNEMLKGIAIASGNDASVA------------------VAEHIAGSEEGFVNMMNKKAKDLGLKNTHF----------QNPTGLPAKDHYSTANDMAIMAKELMK 195
8 -4.670IDP06160 gene: folE; GTP cyclohydrolase I [Helicobacter pylori J99] NP_223581 [Helicobacter pylori J99]  ali follow..  14  90...............EKIVGISAIAKLIEIYSKRLQIQERLTTQIAETFDEIIEPRGVIVV--------------CEAKHLCMSMQGVQKQNAIIKTSVLRGLFKKDPKTRAEFMQLLKS....... 180
9 -4.670IDP90183 gene: CPXV035 CDS; CPXV035 protein AAM13482.1 [Cowpox virus (Brighton Red)]  ali follow..  7  30RIQDHHLKDEAIILNG---NYHAFESLLDYMRKINITINNVEMILVAAVVPPVVDLCVKTMIHNINSTNCIRMFNFSKKYRIKKLYNASMSEIINNITAVTSDPEFGKLSKDELTTILSHEDVNVNH 159
10 -4.660IDP00185 hypothetical protein YPO0639 [Yersinia pestis CO92]  ali follow..  8  346...VRRSTADRNLLRKEFD-----NGVRKKFLKDIANNPEVVKRLDAFDRSVLAKQVHHKLPLDDSGNNNFDNLVLISTRPEHAAFTTTQKHITKNLTPTGTN........................ 447
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 7 0 1   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Lesley SA, Kuhn P, Godzik A., Deacon AM, Mathews I, Kreusch A, Spraggon G, Klock HE, McMullan D, Shin T, Vincent J, Robb A, Brinen LS, Miller MD, McPhillips TM, Miller MA, Scheibe D, Canaves JM, Guda C, Jaroszewski L, Selby TL, Elsliger MA, Wooley J, Taylor SS, Hodgson KO, Wilson IA, Schultz PG, Stevens RC. Structural genomics of the Thermotoga maritima proteome implemented in a high-throughput structure determination pipeline. Proc Natl Acad Sci U S A. 2002 Sep 3;99(18):11664-9. Epub 2002 Aug 22.