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Query: d3ldaa1 a.60.4.1 (A:78-144) DNA repair protein Rad51, N-terminal domain {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}, from SCOP207

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .
# Score Template Links and tools%idFirst GSFVPIEKLQVNGITMADVKKLRESGLHTAEAVAYAPRKDLLEIKGISEAKADKLLNEAARLVPMGFLast
1 -10.500IDP90779 gene: nusA; transcription elongation factor NusA [Yersinia pestis CO92] YPO3497 [Yersinia pestis CO92]  ali follow..  28  433......DLLNLAGLERSMAFKLAARGVCTLEDLAEQGIDDLADIEGLSDEQAGELIMAARNI..... 488
2 -10.200IDP90688 gene: rpoA; DNA-directed RNA polymerase subunit alpha [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj1595 [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]  ali follow..  12  255........ITDLNLSARSYNCLEKAGVVYIGELALMSVSELAGLKNLGKKSLDEIKNIMESI..... 308
3 -10.000IDP90736 DNA-directed RNA polymerase subunit alpha [Vibrio cholerae O1 biovar eltor str. N16961] VC2571 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  11  258........VDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASR..... 311
4 -9.970IDP92627 gene: rpoA; RNA polymerase, alpha subunit [Escherichia coli str. K-12 substr. MG1655] b3295 [Escherichia coli str. K-12 substr. MG1655]  ali follow..  11  257........VDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASR..... 310
5 -9.860IDP05236 gene: ruvA; hypothetical protein lmo1533 [Listeria monocytogenes EGD-e] lmo1533 [Listeria monocytogenes EGD-e]  ali follow..  14  74.......LLSVSGIGPKSALAIIAS--PLISAIESEDDVYLTKFPSVGKKTARQIILDLKGKLA... 132
6 -9.380IDP05336 gene: ruvA; hypothetical protein Cj0794 [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj0799c [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]  ali follow..  23  75.......LLKVNGVGANTAMAVCSS--SFYKALSLGDESVLKKVPGIGPKSAKRIIEALAALLTLGF 154
7 -9.040IDP91448 nucleotidyltransferase/DNA polymerase involved in DNA repair [Vibrio vulnificus CMCP6] VV1_0391 [Vibrio vulnificus CMCP6]  ali follow..  14  177...KQLEVGDVWGVGKKISTRLKHMGINSAYDLSQYAPEQARREFSVEVERTVRELNG......... 231
8 -8.970IDP90753 gene: ligA; NAD-dependent DNA ligase LigA [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj0586 [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]  ali follow..  23  431......KCLNIDGLGENIVELLYKHKITTLESIFHLKFNDFEGLEGFKEKKINNLLNAIEQ...... 486
9 -8.860IDP90257 gene: lig; DNA ligase [Staphylococcus aureus subsp. aureus MRSA252] SAR1996 [Staphylococcus aureus subsp. aureus MRSA252]  ali follow..  20  439......QAMNIDGLGTKIIQQLYQSEIKDVADIFYLTEEDLLPLDRMGQKKVDNLLAAIQQ...... 494
10 -8.400IDP90769 gene: ligA; NAD-dependent DNA ligase LigA [Vibrio cholerae O1 biovar eltor str. N16961] VC0971 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  10  447......KAMDVEGLGDKVIEQLVDREVSTPADLFRLRAGELTILERMGPKSAQNVIDALNK...... 502
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 1 0 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Godzik A. Fragnostic: walking through protein structure space. Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W249-51.