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Query: d1gcva_ a.1.1.2 (A:) Hemoglobin, alpha-chain {Houndshark (Mustelus griseus) [TaxId: 89020]}, from SCOP207

Results of FFAS03 search in H.sapiens
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140
# Score Template Links and tools%idFirst AFTACEKQTIGKIAQVLAKSPEAYGAECLARLFVTHPGSKSYFEYKDYSAAGAKVQVHGGKVIRAVVKAAEHVDDLHSHLETLALTHGKKLLVDPQNFPMLSECIIVTLATHLTEFSPDTHCAVDKLLSAICQELSSRYRLast
1 -64.700sp|P09105|HBAT_HUMAN Hemoglobin subunit theta-1 OS=Homo sapiens GN=HBQ1 PE=1 SV=2  ali follow..  36  2ALSAEDRALVRALWKKLGSNVGVYTTEALERTFLAFPATKTYFSHLDLSPGSSQVRAHGQKVADALSLAVERLDDLPHALSALSHLHACQLRVDPASFQLLGHCLLVTLARHYPGFSPALQASLDKFLSHVISALVSEYR 142
2 -64.500sp|Q6B0K9|HBM_HUMAN Hemoglobin subunit mu OS=Homo sapiens GN=HBM PE=2 SV=1  ali follow..  35  2.LSAQERAQIAQVWDLIAGHEAQFGAELLLRLFTVYPSTKVYFPHLSACQDATQLLSHGQRMLAAVGAAVQHVDNLRAALSPLADLHALVLRVDPANFPLLIQCFHVVLASHLQDFTVQMQAAWDKFLTGVAVVLTEKYR 141
3 -64.400sp|P02008|HBAZ_HUMAN Hemoglobin subunit zeta OS=Homo sapiens GN=HBZ PE=1 SV=2  ali follow..  36  2SLTKTERTIIVSMWAKISTQADTIGTETLERLFLSHPQTKTYFPHFDLHPGSAQLRAHGSKVVAAVGDAVKSIDDIGGALSKLSELHAYILRVDPVNFKLLSHCLLVTLAARFPAFTAEAHAAWDKFLSVVSSVLTEKYR 142
4 -63.900sp|P69905|HBA_HUMAN Hemoglobin subunit alpha OS=Homo sapiens GN=HBA1 PE=1 SV=2  ali follow..  39  2VLSPADKTNVKAAWGKVGAHAGEYGAEALERMFLSFPTTKTYFPHFDLSHGSAQVKGHGKKVADALTNAVAHVDDMPNALSALSDLHAHKLRVDPVNFKLLSHCLLVTLAAHLPAFTPAVHASLDKFLASVSTVLTSKYR 142
5 -58.600sp|P02144|MYG_HUMAN Myoglobin OS=Homo sapiens GN=MB PE=1 SV=2  ali follow..  24  2GLSDGEWQLVLNVWGKVEADIPGHGQEVLIRLFKGHPETLEKFDKFDEMKASEDLKKHGATVLTALGGILKKKGHHEAEIKPLAQSHATKHKIPVKYLEFISECIIQVLQSKHPGFGADAQGAMNKALELFRKDMASNYK 148
6 -58.200sp|P68871|HBB_HUMAN Hemoglobin subunit beta OS=Homo sapiens GN=HBB PE=1 SV=2  ali follow..  30  3HLTPEEKSAVTALWGKVNVD--EVGGEALGRLLVVYPWTQRFFESFDAVMGNPKVKAHGKKVLGAFSDGLAHLDNLKGTFATLSELHCDKLHVDPENFRLLGNVLVCVLAHHFGKFTPPVQAAYQKVVAGVANALAHKYH 147
7 -58.000sp|P02042|HBD_HUMAN Hemoglobin subunit delta OS=Homo sapiens GN=HBD PE=1 SV=2  ali follow..  30  3HLTPEEKTAVNALWGKVNVD--AVGGEALGRLLVVYPWTQRFFESFDAVMGNPKVKAHGKKVLGAFSDGLAHLDNLKGTFSQLSELHCDKLHVDPENFRLLGNVLVCVLARNFGKFTPQMQAAYQKVVAGVANALAHKYH 147
8 -57.600sp|P02100|HBE_HUMAN Hemoglobin subunit epsilon OS=Homo sapiens GN=HBE1 PE=1 SV=2  ali follow..  32  3HFTAEEKAAVTSLWSKM--NVEEAGGEALGRLLVVYPWTQRFFDSFSAILGNPKVKAHGKKVLTSFGDAIKNMDNLKPAFAKLSELHCDKLHVDPENFKLLGNVMVIILATHFGKFTPEVQAAWQKLVSAVAIALAHKYH 147
9 -56.700sp|P69891|HBG1_HUMAN Hemoglobin subunit gamma-1 OS=Homo sapiens GN=HBG1 PE=1 SV=2  ali follow..  33  4.FTEEDKATITSLWGKV--NVEDAGGETLGRLLVVYPWTQRFFDSFGNLSGNPKVKAHGKKVLTSLGDAIKHLDDLKGTFAQLSELHCDKLHVDPENFKLLGNVLVTVLAIHFGKFTPEVQASWQKMVTAVASALSSRYH 147
10 -56.500sp|P69892|HBG2_HUMAN Hemoglobin subunit gamma-2 OS=Homo sapiens GN=HBG2 PE=1 SV=2  ali follow..  32  3HFTEEDKATITSLWGKV--NVEDAGGETLGRLLVVYPWTQRFFDSFSAIMGNPKVKAHGKKVLTSLGDAIKHLDDLKGTFAQLSELHCDKLHVDPENFKLLGNVLVTVLAIHFGKFTPEVQASWQKMVTGVASALSSRYH 147
11 -53.800sp|Q8WWM9|CYGB_HUMAN Cytoglobin OS=Homo sapiens GN=CYGB PE=1 SV=1  ali follow..  25  18ELSEAERKAVQAMWARLYANCEDVGVAILVRFFVNFPSAKQYFSQFLEMERSPQLRKHACRVMGALNTVVENLHDVSSVLALVGKAHALKHKVEPVYFKILSGVILEVVAEEFASFPPETQRAWAKLRGLIYSHVTAAYK 167
12 -52.900sp|Q9NPG2|NGB_HUMAN Neuroglobin OS=Homo sapiens GN=NGB PE=1 SV=1  ali follow..  25  1.MERPEPELIRQSWRAVSRSPLEHGTVLFARLFALEPDLLPLFQYNEDCLSSPEFLDHIRKVMLVIDAAVTNVEDLEEYLASLGRKHR-AVGVKLSSFSTVGESLLYMLEKCLGPFTPATRAAWSQLYGAVVQAMSRGWD 149
13 -19.800sp|Q8N7X0|CAN7L_HUMAN Calpain-7-like protein OS=Homo sapiens GN=C6orf103 PE=2 SV=3  ali   12  21...............................VIGDEHVVLPNFE-----PESCRFTEQSLLIMKAIGNVIANFKDLSAALKDLQTAHFHDKELTAQHFRVFHLSLWRLMKKVQITPPPNFKFAFRAMVLDLELLNSSLEE 132
14 -15.400sp|Q8N7X0|CAN7L_HUMAN Calpain-7-like protein OS=Homo sapiens GN=C6orf103 PE=2 SV=3  ali   10  162................................IHICSMVSFVIGDEHVVPESCRFTEQSLLIMKAIGNVIANFKDLSAALKDLQTAHYHDKELTAQHFRVFHLSLWRLMKKVQITPPPNFKFAFRAMV............ 270
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 1 0 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Godzik A. Fragnostic: walking through protein structure space. Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W249-51.