current user: public
If you have questions about the server, please let us know.

Query: d1x9fd_ a.1.1.2 (D:) Extracellular dodecameric hemoglobin (erythrocruorin), subunit D1 {Common earthworm (Lumbricus terrestris) [TaxId: 6398]}, from SCOP207

Results of FFAS03 search in H.sapiens
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140
# Score Template Links and tools%idFirst ECLVTESLKVKLQWASAFGHAHERVAFGLELWRDIIDDHPEIKAPFSRVRGDNIYSPEFGAHSQRVLSGLDITISMLDTPDMLAAQLAHLKVQHVERNLKPEFFDIFLKHLLHVLGDRLGTHFDFGAWHDCVDQIIDGIKLast
1 -54.200sp|Q9NPG2|NGB_HUMAN Neuroglobin OS=Homo sapiens GN=NGB PE=1 SV=1  ali follow..  20  1.MERPEPELIRQSWRAV---SRSPLEHGTVLFARLFALEPDLLPLFQYNPEDCLSSPEFLDHIRKVMLVIDAAVTNVEDLSSLEEYLASLGRKHRAVGVKLSSFSTVGESLLYMLEKCLGPAFTPAAWSQLYGAVVQAMS 145
2 -50.200sp|Q8WWM9|CYGB_HUMAN Cytoglobin OS=Homo sapiens GN=CYGB PE=1 SV=1  ali follow..  22  18ELSEAERKAVQAMWARL---YANCEDVGVAILVRFFVNFPSAKQYFSQFKHEMERSPQLRKHACRVMGALNTVVENLHDPDKVSSVLALVGKAHAKHKVEPVYFKILSGVILEVVAEEFASDFPPEAWAKLRGLIYSHVT 163
3 -47.800sp|P09105|HBAT_HUMAN Hemoglobin subunit theta-1 OS=Homo sapiens GN=HBQ1 PE=1 SV=2  ali follow..  18  3.LSAEDRALVRALWKKL---GSNVGVYTTEALERTFLAFPATKTYFSHLD-LSPGSSQVRAHGQKVADALSLAVERLDDLPHALSALSHLHACQ--LRVDPASFQLLGHCLLVTLARHYPGDFSPASLDKFLSHVISAL. 137
4 -47.800sp|P69892|HBG2_HUMAN Hemoglobin subunit gamma-2 OS=Homo sapiens GN=HBG2 PE=1 SV=2  ali follow..  19  3HFTEEDKATITSLWGKV-----NVEDAGGETLGRLLVVYPWTQRFFDSFGSAIMGNPKVKAHGKKVLTSLGDAIKHLDDLKGTFAQL--SELHCDKLHVDPENFKLLGNVLVTVLAIHFGKEFTPESWQKMVTGVASALS 143
5 -47.800sp|P69891|HBG1_HUMAN Hemoglobin subunit gamma-1 OS=Homo sapiens GN=HBG1 PE=1 SV=2  ali follow..  19  3HFTEEDKATITSLWGKV-----NVEDAGGETLGRLLVVYPWTQRFFDSFGNAIMGNPKVKAHGKKVLTSLGDAIKHLDDLKGTFAQL--SELHCDKLHVDPENFKLLGNVLVTVLAIHFGKEFTPESWQKMVTAVASALS 143
6 -47.300sp|P02008|HBAZ_HUMAN Hemoglobin subunit zeta OS=Homo sapiens GN=HBZ PE=1 SV=2  ali follow..  19  3.LTKTERTIIVSMWAKI---STQADTIGTETLERLFLSHPQTKTYFPHFD-LHPGSAQLRAHGSKVVAAVGDAVKSIDDIGGALSKLSELHAYI--LRVDPVNFKLLSHCLLVTLAARFPADFTAEAWDKFLSVVSSVL. 137
7 -47.200sp|Q6B0K9|HBM_HUMAN Hemoglobin subunit mu OS=Homo sapiens GN=HBM PE=2 SV=1  ali follow..  20  2.LSAQERAQIAQVWDLI---AGHEAQFGAELLLRLFTVYPSTKVYFPHLS-ACQDATQLLSHGQRMLAAVGAAVQHVDN---LRAALSPLADLHAVLRVDPANFPLLIQCFHVVLASHLQDEFTVQAWDKFLTGVAVVLT 137
8 -47.000sp|P02100|HBE_HUMAN Hemoglobin subunit epsilon OS=Homo sapiens GN=HBE1 PE=1 SV=2  ali follow..  17  3HFTAEEKAAVTSLWSKM-----NVEEAGGEALGRLLVVYPWTQRFFDSFGSAILGNPKVKAHGKKVLTSFGDAIKNMDNLKPAFAKL--SELHCDKLHVDPENFKLLGNVMVIILATHFGKEFTPEAWQKLVSAVAIALA 143
9 -46.700sp|P02144|MYG_HUMAN Myoglobin OS=Homo sapiens GN=MB PE=1 SV=2  ali follow..  15  3.LSDGEWQLVLNVWGKV---EADIPGHGQEVLIRLFKGHPETLEKFDKFKDEMKASEDLKKHGATVLTALGGILKKKGH---HEAEIKPLAQSHAKHKIPVKYLEFISECIIQVLQSKHPGDFGADAMNKALELFRKDMA 144
10 -46.600sp|P69905|HBA_HUMAN Hemoglobin subunit alpha OS=Homo sapiens GN=HBA1 PE=1 SV=2  ali follow..  16  3.LSPADKTNVKAAWGKV---GAHAGEYGAEALERMFLSFPTTKTYFPHFD-LSHGSAQVKGHGKKVADALTNAVAHVDDMPNALSALSDLH--AHKLRVDPVNFKLLSHCLLVTLAAHLPAEFTPASLDKFLASVSTVL. 137
11 -46.200sp|P02042|HBD_HUMAN Hemoglobin subunit delta OS=Homo sapiens GN=HBD PE=1 SV=2  ali follow..  20  3HLTPEEKTAVNALWGKV-----NVDAVGGEALGRLLVVYPWTQRFFESFGDAVMGNPKVKAHGKKVLGAFSDGLAHLDNLKGTFSQLSEL--HCDKLHVDPENFRLLGNVLVCVLARNFGKEFTPQAYQKVVAGVANALA 143
12 -45.600sp|P68871|HBB_HUMAN Hemoglobin subunit beta OS=Homo sapiens GN=HBB PE=1 SV=2  ali follow..  20  3HLTPEEKSAVTALWGKV-----NVDEVGGEALGRLLVVYPWTQRFFESFGDAVMGNPKVKAHGKKVLGAFSDGLAHLDN---LKGTFATLSELHCKLHVDPENFRLLGNVLVCVLAHHFGKEFTPPAYQKVVAGVANALA 143
13 -22.900sp|Q8N7X0|CAN7L_HUMAN Calpain-7-like protein OS=Homo sapiens GN=C6orf103 PE=2 SV=3  ali   17  21..................................VIGDEHVVLPNFEP------ESCRFTEQSLLIMKAIGNVIANFKDKGKLSAALKDLQTAHYPVELTAQHFRVFHLSLWRLMKKVQITKPPPNAFRAMVLDLELLNS 128
14 -18.200sp|Q8N7X0|CAN7L_HUMAN Calpain-7-like protein OS=Homo sapiens GN=C6orf103 PE=2 SV=3  ali   17  171..................................VIGDEHVVLPNFEP------ESCRFTEQSLLIMKAIGNVIANFKDKGKLSAALKDLQTAHYPVELTAQHFRVFHLSLWRLMKKVQITKPPPNAFRAMVLDLELLNS 278
15 -9.780sp|Q9Y6D5|BIG2_HUMAN Brefeldin A-inhibited guanine nucleotide-exchange protein 2 OS=Homo sapiens GN=ARFGEF2 PE=1 SV=3  ali   14  2.........LTVMFEIM---KSYGHTFEKHWWQDLFRI---VFRIFDNMKLPEQLSEKSEWMTTTCNHALYAICDVFTQLSDVFAQLQWCVKQ------DNEQLARSGTNCLENLVISNGEKFSPEVWDETCNCMLDIFK 129
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 8 6 1   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Rychlewski L, Jaroszewski L, Li W, Godzik A. Comparison of sequence profiles. Strategies for structural predictions using sequence information. Protein Sci. 2000 Feb;9(2):232-41.