current user: public

If you have questions about the server, please let us know.

Query: d3g46a_ a.1.1.2 (A:) Hemoglobin I {Ark clam (Scapharca inaequivalvis) [TaxId: 6561]}, from SCOP207

Results of FFAS03 search in H.sapiens
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .
# Score Template Links and tools%idFirst PSVYDAAAQLTADVKKDLRDSWKVIGSDKKGNGVALMTTLFADNQETIGYFKRLGDVSQGMANDKLRGHSITLMYALQNFIDQLDNPDDLVCVVEKFAVNHITRKISAAEFGKINGPIKKVLASKNFGDKYANAWAKLVAVVQAALLast
1 -56.100sp|Q9NPG2|NGB_HUMAN Neuroglobin OS=Homo sapiens GN=NGB PE=1 SV=1  ali follow..  15  1.........MERPEPELIRQSWRAVSRSPLEHGTVLFARLFALEPDLLPLFQQFSSPEDCLSSPEFLDHIRKVMLVIDAAVTNVEDLSSLEEYLASLGRKHRAVGVKLSSFSTVGESLLYMLEGPAFTPATRAAWSQLYGAVVQAM 144
2 -55.000sp|Q8WWM9|CYGB_HUMAN Cytoglobin OS=Homo sapiens GN=CYGB PE=1 SV=1  ali follow..  21  10IERRERSEELSEAERKAVQAMWARLYANCEDVGVAILVRFFVNFPSAKQYFSQFKHMLEMERSPQLRKHACRVMGALNTVVENLHDPDKVSSVLALVGKAHAKHKVEPVYFKILSGVILEVVAASDFPPETQRAWAKLRGLIYSHV 162
3 -51.000sp|P02144|MYG_HUMAN Myoglobin OS=Homo sapiens GN=MB PE=1 SV=2  ali follow..  20  1.......MGLSDGEWQLVLNVWGKVEADIPGHGQEVLIRLFKGHPETLEKFDKFKHLDEMKASEDLKKHGATVLTALGGILKKKGH---HEAEIKPLAQSHAKHKIPVKYLEFISECIIQVLQPGDFGADAQGAMNKALELFRKDM 143
4 -50.500sp|P09105|HBAT_HUMAN Hemoglobin subunit theta-1 OS=Homo sapiens GN=HBQ1 PE=1 SV=2  ali follow..  19  1.......MALSAEDRALVRALWKKLGSNVGVYTTEALERTFLAFPATKTYFSHL---DLSPGSSQVRAHGQKVADALSLAVERLDDLPHALSALSHLHACQ--LRVDPASFQLLGHCLLVTLAPGDFSPALQASLDKFLSHVISAL 137
5 -50.200sp|P02008|HBAZ_HUMAN Hemoglobin subunit zeta OS=Homo sapiens GN=HBZ PE=1 SV=2  ali follow..  18  1.......MSLTKTERTIIVSMWAKISTQADTIGTETLERLFLSHPQTKTYFPHF---DLHPGSAQLRAHGSKVVAAVGDAVKSIDDIGGALSKLSELHAYI--LRVDPVNFKLLSHCLLVTLAPADFTAEAHAAWDKFLSVVSSVL 137
6 -49.600sp|P69905|HBA_HUMAN Hemoglobin subunit alpha OS=Homo sapiens GN=HBA1 PE=1 SV=2  ali follow..  16  1.......MVLSPADKTNVKAAWGKVGAHAGEYGAEALERMFLSFPTTKTYFPHF---DLSHGSAQVKGHGKKVADALTNAVAHVDDMPNALSALSDLH--AHKLRVDPVNFKLLSHCLLVTLAPAEFTPAVHASLDKFLASVSTVL 137
7 -49.600sp|Q6B0K9|HBM_HUMAN Hemoglobin subunit mu OS=Homo sapiens GN=HBM PE=2 SV=1  ali follow..  23  2.........LSAQERAQIAQVWDLIAGHEAQFGAELLLRLFTVYPSTKVYFPHL---SACQDATQLLSHGQRMLAAVGAAVQHVDN---LRAALSPLADLHAVLRVDPANFPLLIQCFHVVLAQDEFTVQMQAAWDKFLTGVAVVL 136
8 -49.300sp|P69892|HBG2_HUMAN Hemoglobin subunit gamma-2 OS=Homo sapiens GN=HBG2 PE=1 SV=2  ali follow..  20  1......MGHFTEEDKATITSLWGKVNVE--DAGGETLGRLLVVYPWTQRFFDSFGNLSAIMGNPKVKAHGKKVLTSLGDAIKHLDDLKGTFAQL--SELHCDKLHVDPENFKLLGNVLVTVLAGKEFTPEVQASWQKMVTGVASAL 142
9 -49.200sp|P69891|HBG1_HUMAN Hemoglobin subunit gamma-1 OS=Homo sapiens GN=HBG1 PE=1 SV=2  ali follow..  20  1......MGHFTEEDKATITSLWGKVNVE--DAGGETLGRLLVVYPWTQRFFDSFGNLSAIMGNPKVKAHGKKVLTSLGDAIKHLDDLKGTFAQL--SELHCDKLHVDPENFKLLGNVLVTVLAGKEFTPEVQASWQKMVTAVASAL 142
10 -48.600sp|P02100|HBE_HUMAN Hemoglobin subunit epsilon OS=Homo sapiens GN=HBE1 PE=1 SV=2  ali follow..  20  1......MVHFTAEEKAAVTSLWSKMNVE--EAGGEALGRLLVVYPWTQRFFDSFGNLSAILGNPKVKAHGKKVLTSFGDAIKNMDNLKPAFAKL--SELHCDKLHVDPENFKLLGNVMVIILAGKEFTPEVQAAWQKLVSAVAIAL 142
11 -48.200sp|P02042|HBD_HUMAN Hemoglobin subunit delta OS=Homo sapiens GN=HBD PE=1 SV=2  ali follow..  22  1......MVHLTPEEKTAVNALWGKVNVD--AVGGEALGRLLVVYPWTQRFFESFGDLDAVMGNPKVKAHGKKVLGAFSDGLAHLDNLKGTFSQLSEL--HCDKLHVDPENFRLLGNVLVCVLAGKEFTPQMQAAYQKVVAGVANAL 142
12 -47.500sp|P68871|HBB_HUMAN Hemoglobin subunit beta OS=Homo sapiens GN=HBB PE=1 SV=2  ali follow..  24  1......MVHLTPEEKSAVTALWGKVNVD--EVGGEALGRLLVVYPWTQRFFESFGDLDAVMGNPKVKAHGKKVLGAFSDGLAHLDN---LKGTFATLSELHCKLHVDPENFRLLGNVLVCVLAGKEFTPPVQAAYQKVVAGVANAL 142
13 -21.500sp|Q8N7X0|CAN7L_HUMAN Calpain-7-like protein OS=Homo sapiens GN=C6orf103 PE=2 SV=3  ali   12  21.......................................VIGDEHVVLPNFEP--------ESCRFTEQSLLIMKAIGNVIANFKDKGKLSAALKDLQTAHYPVELTAQHFRVFHLSLWRLMKITKPPPNFKFAFRAMVLDLELLN 127
14 -17.600sp|Q8N7X0|CAN7L_HUMAN Calpain-7-like protein OS=Homo sapiens GN=C6orf103 PE=2 SV=3  ali   12  162........................................IHICSMVSFVIGDEHVVLPEPESCRFTEQSLLIMKAIGNVIANFKDKGKLSAALKDLQTAHYDKELTAQHFRVFHLSLWRLMKITKPPPNFKFAFRAMV....... 270

FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 5 6 5   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Rychlewski L, Zhang B, Godzik A. Functional insights from structural predictions: analysis of the Escherichia coli genome. Protein Sci. 1999 Mar;8(3):614-24.