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Query: d3ldaa1 a.60.4.1 (A:78-144) DNA repair protein Rad51, N-terminal domain {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}, from SCOP207

Results of FFAS03 search in H.sapiens
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .
# Score Template Links and tools%idFirst GSFVPIEKLQVNGITMADVKKLRESGLHTAEAVAYAPRKDLLEIKGISEAKADKLLNEAARLVPMGFLast
1 -16.100sp|Q8TDG4|HELQ_HUMAN Helicase POLQ-like OS=Homo sapiens GN=HELQ PE=1 SV=2  ali   23  109...ELIPLMEVTGVLEGRAKQLYSAGYKSLMHLANANPEVLVRIDHLSRRQAKQIVSSAKMLL.... 169
2 -15.800sp|Q14565|DMC1_HUMAN Meiotic recombination protein DMC1/LIM15 homolog OS=Homo sapiens GN=DMC1 PE=1 SV=2  ali follow..  40  19SLFQDIDLLQKHGINVADIKKLKSVGICTIKGIQMTTRRALCNVKGLSEAKVDKIKEAANKLIEPGF 85
3 -15.800sp|Q06609|RAD51_HUMAN DNA repair protein RAD51 homolog 1 OS=Homo sapiens GN=RAD51 PE=1 SV=1  ali follow..  65  20FGPQPISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKELINIKGISEAKADKILAEAAKLVPMGF 86
4 -13.900sp|Q8TDG4|HELQ_HUMAN Helicase POLQ-like OS=Homo sapiens GN=HELQ PE=1 SV=2  ali   21  259...ELIPLMEVTGVLEGRAKQLYSAGYKSLMHLANANPEVLVRT....................... 299
5 -13.400sp|Q8IYD8|FANCM_HUMAN Fanconi anemia group M protein OS=Homo sapiens GN=FANCM PE=1 SV=2  ali   9  176.......YLSIPNISYITALNMCHQ-FSSVKRMANSSLQEISMYAQVTHQKAEEIYRYIHY...... 228
6 -13.300sp|O43542|XRCC3_HUMAN DNA repair protein XRCC3 OS=Homo sapiens GN=XRCC3 PE=1 SV=1  ali follow..  16  3........LDLLDLNPRIIAAIKKAKLKSVKEVLHFSGPDLKRLTNLSSPEVWHLLRTASLHL.... 57
7 -13.200sp|O43502|RA51C_HUMAN DNA repair protein RAD51 homolog 3 OS=Homo sapiens GN=RAD51C PE=1 SV=1  ali follow..  26  9...EMQRDLVSFPLSPAVRVKLVSAGFQTAEELLEVKPSELSKEVGISKAEALETLQIIRREC.... 68
8 -12.500sp|O15315|RA51B_HUMAN DNA repair protein RAD51 homolog 2 OS=Homo sapiens GN=RAD51L1 PE=1 SV=2  ali follow..  18  6........LKRVGLSQELCDRLSRHQILTCQDFLCLSPLELMKVTGLSYRGVHELLCMVSRAC.... 60
9 -12.400sp|A2PYH4|HFM1_HUMAN Probable ATP-dependent DNA helicase HFM1 OS=Homo sapiens GN=HFM1 PE=1 SV=2  ali   11  27...SLHVSKQLEKIGITLSNAIVNAGLTSFKKIEETDARELELILNRHPPFGTQIKETVMYL..... 85
10 -12.400sp|O75771|RA51D_HUMAN DNA repair protein RAD51 homolog 4 OS=Homo sapiens GN=RAD51L3 PE=1 SV=1  ali follow..  15  4.....LRVGLCPGLTEEMIQLLRSHRIKTVVDLVSADLEEVAQKCGLSYKALVALRRVLLAQF.... 61
11 -12.000sp|P07992|ERCC1_HUMAN DNA excision repair protein ERCC-1 OS=Homo sapiens GN=ERCC1 PE=1 SV=1  ali follow..  22  239.......LTTVKSVNKTDSQTLLTT-FGSLEQLIAASREDLALCPGLGPQKARRLFDVLHE...... 291
12 -11.700sp|Q9UBZ9|REV1_HUMAN DNA repair protein REV1 OS=Homo sapiens GN=REV1 PE=1 SV=1  ali   16  43....GQLVTNLPGVGHSMESKLASLGIKTCGDLQYMTMAKLQKE--FGPKTGQMLYRFCRGL..... 98
13 -11.400sp|O75643|U520_HUMAN U5 small nuclear ribonucleoprotein 200 kDa helicase OS=Homo sapiens GN=SNRNP200 PE=1 SV=2  ali   8  9......YLKQLPHFTSEHIKRCTDKGVESVFDIMEMEDEERNALLQLTDSQIADVARFCNRY..... 64
14 -11.000sp|Q92889|XPF_HUMAN DNA repair endonuclease XPF OS=Homo sapiens GN=ERCC4 PE=1 SV=3  ali   19  102.......LLKMPGVNAKNCRSLMHH-VKNIAELAALSQDELTSILG-NAANAKQLYDFIHT...... 153
15 -10.600sp|Q9BTP7|FAP24_HUMAN Fanconi anemia-associated protein of 24 kDa OS=Homo sapiens GN=FAAP24 PE=1 SV=2  ali follow..  13  163.......VQQIPGVGKVKAPLLLQK-FPSIQQLSNASIGELEQV--VGQAVAQQIHAFFTQ...... 213
16 -10.500sp|Q92889|XPF_HUMAN DNA repair endonuclease XPF OS=Homo sapiens GN=ERCC4 PE=1 SV=3  ali   20  252.......LLKMPGVNAKNCRSLMHH-VKNIAELAALSQDELTSILG-NAANAKQLYD.......... 299
17 -10.400sp|Q9UBZ9|REV1_HUMAN DNA repair protein REV1 OS=Homo sapiens GN=REV1 PE=1 SV=1  ali   15  189DFIRGQLVTNLPGVGHSMESKLASLGIKTCGDLQYMTMAKLQKE--FGPKTGQMLYRFCRGL..... 248
18 -9.710sp|Q14807|KIF22_HUMAN Kinesin-like protein KIF22 OS=Homo sapiens GN=KIF22 PE=1 SV=5  ali   14  153......DLRSLQRIGPKKAQLIELHG---------SQVEDLERVEGITGKQMESFLKA......... 201
19 -9.440sp|Q9UBT6|POLK_HUMAN DNA polymerase kappa OS=Homo sapiens GN=POLK PE=1 SV=1  ali   17  44DFIKDLPIRKVSGIGKVTEKMLKALGIITCTELYQQRALLSLLFSE..................... 89
20 -9.380sp|Q9UNA4|POLI_HUMAN DNA polymerase iota OS=Homo sapiens GN=POLI PE=1 SV=1  ali   14  234.....NHIKEIPGIGYKTAKCLEALGINSVRDLQTFSPKILEKE--LGISVAQRIQKLSFGE..... 288
21 -9.000sp|O75643|U520_HUMAN U5 small nuclear ribonucleoprotein 200 kDa helicase OS=Homo sapiens GN=SNRNP200 PE=1 SV=2  ali   9  160.......LKQLPHFTSEHIKRCTDKGVESVFDIMEMEDEERNALLQLTDSQIADVARFCNRY..... 214
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 1 0 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Godzik A. Fragnostic: walking through protein structure space. Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W249-51.