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Query: d4i0va_ a.1.1.1 (A:) automated matches {Synechococcus sp. [TaxId: 32049]}, from SCOP207

Results of FFAS03 search in H.sapiens
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120
# Score Template Links and tools%idFirst ASLYEKLGGAAAVDLAVEKFYGKVLADERVNRFFVNTDMAKQKQHQKDFMTYAFGGTDRFPGRSMRAAHQDLVENAGLTDVHFDAIAENLVLTLQELNVSQDLIDEVVTIVGSVQHRNDVLNRLast
1 -7.290sp|Q3KRA6|CB076_HUMAN UPF0538 protein C2orf76 OS=Homo sapiens GN=C2orf76 PE=2 SV=3  ali follow..  9  25..VYHGVNLDQTVKEFIVFLKQDIPLRTNLPPPFRNYKYDALK---------------------IHQAHKSKTNELVLSLEDDERLLLKEDSTLKAAGIASETEIAFFCEEDYKNYKANPISS 125
2 -6.210sp|P29590|PML_HUMAN Probable transcription factor PML OS=Homo sapiens GN=PML PE=1 SV=3  ali   8  165...LKIDNETQKISQLASKFRVVIQPEAFFSIYSKAVSLEVGLQHFLSFLSSM--------RRPILACYKLWGPGLPN-----------FFRALEDINRLWEFQEAISGFLAALPLIRERVPG 270
3 -6.170sp|Q6DN90|IQEC1_HUMAN IQ motif and SEC7 domain-containing protein 1 OS=Homo sapiens GN=IQSEC1 PE=1 SV=1  ali   15  15...IRVQGEAQKVERLIEAFSQRYCINPGVVRQFRNPDTIFILAFAIILLNTDMYSPNVKPERKMKL----------------EDFIKNLRGVDDGEDIPREMLMGIYERIRKRELK...... 113
4 -6.080sp|Q6DN90|IQEC1_HUMAN IQ motif and SEC7 domain-containing protein 1 OS=Homo sapiens GN=IQSEC1 PE=1 SV=1  ali   15  165...IRVQGEAQKVERLIEAFSQRCICNPGVVRQFRNPDTIFILAFAIILLNTDMYSPNVKPERKMKKNLRGVDDGEDIPREMLMGIYERIRK--RELKTNEDHVSQVQKVEKLIVGKKPIGS. 287
5 -5.870sp|Q5T011|SZT2_HUMAN Protein SZT2 OS=Homo sapiens GN=SZT2 PE=2 SV=3  ali   10  47EALREQMVGMQPPQAPRDLIFRTQFLDHPSPSSAWMEPRYKEAANHCALLQEH------AQRCYVRGLFRSLQQAQSVTSQDLLTAVDACEELLQEIDIT-PFLLALCGHTWGLPHAPP.... 158
6 -5.820sp|O95757|HS74L_HUMAN Heat shock 70 kDa protein 4L OS=Homo sapiens GN=HSPA4L PE=1 SV=3  ali   12  79....PYLGGRNFDEALVDYFCDEFKTKYKINVKENSRALLRLYQE-CEKLKKLMSANASDLPLNIECFMNDLDVSSKMNRAQFEQLCASLKAVMEQANLQREDISSIEIVGGATR........ 196
7 -5.800sp|Q92598|HS105_HUMAN Heat shock protein 105 kDa OS=Homo sapiens GN=HSPH1 PE=1 SV=1  ali   11  79....PFLGGKNFDEKLVEHFCAEFKTKYKLDAKSKIRALLRLYQE-CEKLKKLMSSNSTDLPLNIECFMNDKDVSGKMNRSQFEELCAELYSLLEQTHLKVEDVSAVEIVGGATR........ 196
8 -5.790sp|Q5T011|SZT2_HUMAN Protein SZT2 OS=Homo sapiens GN=SZT2 PE=2 SV=3  ali   11  197EALREQMVGMQPPQAPRDLIFRTQFLDHPSPSSAWMEPRYKEAANHCALLQEH------AQRCYVRGLFRSLQQAQSVTSQDLLTAVDACEELLQEIDITP...................... 291
9 -5.760sp|P34932|HSP74_HUMAN Heat shock 70 kDa protein 4 OS=Homo sapiens GN=HSPA4 PE=1 SV=4  ali   12  79....TTLGGRKFDEVLVNHFCEEFGKKYKLDIKSKIRALLRLSQE-CEKLKKLMSANASDLPLSIECFMNDVDVSGTMNRGKFLEMCNDLRSVLEQTKLKKEDIYAVEIVGGATR........ 196
10 -5.440sp|P29973|CNGA1_HUMAN cGMP-gated cation channel alpha-1 OS=Homo sapiens GN=CNGA1 PE=1 SV=3  ali   13  197.............RKYVYSLYWSTLTLTTIG----ETPPPVRDSEYVFVVVDFLIGVLIFA--TIVGNIGSMISNMNAARAEFQARIDAIKQYMHFRNVSKDMEKRVIKWFDYLWTNKKTVDE 300
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 8 6 1   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Rychlewski L, Jaroszewski L, Li W, Godzik A. Comparison of sequence profiles. Strategies for structural predictions using sequence information. Protein Sci. 2000 Feb;9(2):232-41.