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Query: d1asha_ a.1.1.2 (A:) Ascaris hemoglobin, domain 1 {Pig roundworm (Ascaris suum) [TaxId: 6253]}, from SCOP207

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst ANKTRELCMKSLEHAKVDTSNEARQDGIDLYKHMFENYPPLRKYFKSREEYTAEDVQNDPFFAKQGQKILLACHVLCATYDDRETFNAYTRELLDRHARDHVHMPPEVWTDFWKLFEEYLGKKTTLDEPTKQAWHEIGREFAKEINKLast
1 -6.040PB002794 gi|86143885|ref|ZP_01062253.1| hypothetical protein MED217_03525 [Flavobacterium sp. MED217]gi|85829592|gb|EAQ48055.1| hypothetical protein MED217_03525 [Leeuwenhoekiella blandensis MED217]  ali follow..  14  258FQPSDSLMTETLARVYV--EQKNFSKAKQAYRILSLKYPEKSGFF-------ADQIRAIEKLQEN.................................................................................. 313
2 -5.380PB014998 gi|86133284|ref|ZP_01051866.1| hypothetical protein MED152_01230 [Tenacibaculum sp. MED152]gi|85820147|gb|EAQ41294.1| hypothetical protein MED152_01230 [Polaribacter dokdonensis MED152]  ali follow..  9  117NEHIQEIIETGFDWLITPQKIAVRAYTMNTLYLFGLENDWVHPELKHLIETKIIH--ESKGTKARGKHILNLIEKHQKS.................................................................... 193
3 -4.960PB019278 gi|154508461|ref|ZP_02044103.1| hypothetical protein ACTODO_00960 [Actinomyces odontolyticus ATCC 17982]gi|153798095|gb|EDN80515.1| hypothetical protein ACTODO_00960 [Actinomyces odontolyticus ATCC 17982]  ali follow..  12  6............................NFLDAMFAPYPASTRLTDAKVELRAMMEDAYADAIASGMTHNEAVGRVITDFGNLQEIAPVLG........................................................ 68
4 -4.860PB019388 gi|83589066|ref|YP_429075.1| Radical SAM [Moorella thermoacetica ATCC 39073]gi|83571980|gb|ABC18532.1| Radical SAM [Moorella thermoacetica ATCC 39073]  ali follow..  12  5..............................FGYLFLDRPPY-------------QVLASSAITYEEMLRLHAIEGLLKYYGNSHLADHAFAYLAATAFDGSY--------AIYEALAAWWEARGLLRRGHSQ--RDLFNHLASFAIH 99
5 -2.780PB022697 Q5LAY4_BACFN/1-165 PB022697; Pfam-B_22697;  ali follow..  10  92AEDFSKLVYKAKKIYDAHRHDLEKERTEDEFMAMYEQYEAFDDLEEEYLDIEEEVTALVASVDDHLELFAKIV.......................................................................... 165
6 -2.770PB009510 _JGI.0345302_ 2004041369 [Human Gut Community Subject 8]  ali follow..  10  24MGLEYDKALKLAEELPEQFFPETATWGLCWHEIKWGLPVQENLSYQERRQAIYEKRDYHSPMTPYIERYLENATGFTVHIAD-KKVRKLIDKLKESHTTYFVN............................................ 155
7 -2.690PB000795 Q74Z21_ASHGO/1-280 PB000795; Pfam-B_795;  ali follow..  10  204...............................ADLVWPNWQARALYIDFW-MLGDAARELPDNSWQKHRARELGNLVMNMFDDVSTVDKCRKFLQKEFFDKYTDDPKV........................................ 280
8 -2.690PB000821 Q82P27_STRAW/1-209 PB000821; Pfam-B_821;  ali follow..  13  47......................................PRLSAGLKLHGEYQGSGFTEPKYIARRGDQLSRLLHLVASSVDGSRDIETIAHRVSGRF-------REVSADNVRYLIEQKLDPLGVTVPEGREE.............. 139
9 -2.570PB007843 JCVI_PEP_1096682172521 /source_dna_id=JCVI_ORF_1096682172520 /offset=0 /translation_table=11 /length=152 /full_length=152  ali follow..  6  7..................................ISGRPGLFEVHTQTRTVVATSLVDGKRINANARNQVSLLSEIIYGLEKEVPLQEVLTMIHTKEEGKQCKSPADELEAYFFDVFQDYDEERVYPSDIKKQWYNIL......... 118
10 -2.470HGC00150 gi|162733542|dbj|BAAZ01030454.1|1.0 TMP01074;  ali follow..  10  16..DELGLSAQAARNLYAG------KANAQVVNYLLE-SPRFLDLTYILEQYFNDTVAAG----AAQNQLYTTISSLTRKTVKTEAGEQAARDIAHLRTSVYQADLVTIENQFMLAVKEVKKEIGNDFAAMQSMTAEAAKRMFTEVAK 150
FFAS is supported by the NIH grant R01-GM087218-01
1 4 3 9 1 0   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Grynberg M, Godzik A. NERD: a DNA processing-related domain present in the anthrax virulence plasmid, pXO1. Trends Biochem Sci. 2004 Mar;29(3):106-10.