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current user: public |
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Query: d1ecaa_ a.1.1.2 (A:) Erythrocruorin {Midge (Chironomus thummi thummi), fraction III [TaxId: 7154]}, from SCOP207 |
. 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 . | |||||||
# | Score | Template | Links and tools | %id | First | LSADQISTVQASFDKVKGDPVGILYAVFKADPSIMAKFTQFAGKDLESIKGTAPFETHANRIVGFFSKIIGELPNIEADVNTFVASHKPRGVTHDQLNNFRAGFVSYMKAHTDFAGAEAAWGATLDTFFGMIFSKM | Last |
1 | -4.770 | HGC00915 gi|162810474|dbj|BABA01034235.1|2.0 TMP01234; | ali follow.. | 4 | 1 | ..............................................................MSKKKRGEERMKEEDNILKKVGKKN-SFKVPEGYFENLTSEVMGKLPEK......................... | 48 |
2 | -4.610 | PB002794 gi|86143885|ref|ZP_01062253.1| hypothetical protein MED217_03525 [Flavobacterium sp. MED217]gi|85829592|gb|EAQ48055.1| hypothetical protein MED217_03525 [Leeuwenhoekiella blandensis MED217] | ali follow.. | 9 | 258 | .FQPSDSLMTETLARV-SKAKQAYRILSLKYPEKSGFFAD---RAIEKLQEN.................................................................................... | 313 |
3 | -4.460 | PB019278 gi|154508461|ref|ZP_02044103.1| hypothetical protein ACTODO_00960 [Actinomyces odontolyticus ATCC 17982]gi|153798095|gb|EDN80515.1| hypothetical protein ACTODO_00960 [Actinomyces odontolyticus ATCC 17982] | ali follow.. | 10 | 6 | .....................NFLDAMFAPYPASTRLTDAKVELRAMMEDAYADAIASGMTHNEAVGRVITDFGNLQEIAPVLGIA.................................................. | 70 |
4 | -4.070 | PB042013 A7V626_BACUN/1-162 PB042013; Pfam-B_42013; | ali follow.. | 1 | 26 | .AEFRPAELAGIWQLCHYVSEIPDVPGILKPSNTFKVLSDDGRIVNFTMIPGKDITGYGTYQQLTDNSYKESIEKNIHLPMLDHKDNIEFEIGDDGVMYLKYFIAKDLNGNELNTWFHETWKRV............ | 151 |
5 | -4.070 | PB014998 gi|86133284|ref|ZP_01051866.1| hypothetical protein MED152_01230 [Tenacibaculum sp. MED152]gi|85820147|gb|EAQ41294.1| hypothetical protein MED152_01230 [Polaribacter dokdonensis MED152] | ali follow.. | 7 | 131 | .......LITPQKIAVRAYTMNTLYLFGLENDWVHPELKHLIETKIIH--ESKGTKARGKHILNLIEKHQKS................................................................ | 193 |
6 | -3.320 | HGC01024 gi|162869036|dbj|BABB01000971.1|4.0 TMP01399; | ali follow.. | 8 | 30 | IQPDRMENILYDYHLSISQKEAYKNYVFEKHHITEAEFDS----------SMVWYTRHTEELASLYKKLGERFRSEKKHMQELLALREN............................................... | 119 |
7 | -2.660 | PB002534 Q8H9W1_9CAUD/1-397 PB002534; Pfam-B_2534; | ali follow.. | 6 | 23 | ...............ELPAIASFGFEVELEGSDEWPRIDGWNRKEDGSLRSGMEYVFDGPASIQRVDRFAATMEAVKPAPTFRCSTHLHMDMRDSSMDVLIKTVLTYM............................ | 119 |
8 | -2.580 | HGC00921 gi|162841401|dbj|BABA01003308.1|3.0 TMP01242; | ali follow.. | 7 | 130 | IIEGERKRTSQGGIPIYNPTIAKVKVHYDIFMEGYEKQKSLQSLTNRSLEQLASMRVQADRLILDIWNQVEAKFQDVSPNEKRLEKCRDYGLEKNRIRRFFKICLSIHIPIF--------WKSL............ | 252 |
9 | -2.370 | PB050904 Q64SA2_BACFR/1-230 PB050904; Pfam-B_50904; | ali follow.. | 10 | 131 | ....................NNLYIETATELVSVFTLLNDAVAKGSNNMLTGAERSKTLWALNDQLSDFSRKLHLLYLSIRYYTFNDVWNNVTAGMLDRDNGEAAR---------MALSHWHRAAALV........ | 230 |
10 | -2.220 | PB007740 Q89YT2_BACTN/1-193 PB007740; Pfam-B_7740; | ali follow.. | 7 | 40 | MMQMQTNQMVRALM-LDDATAAKFTPIYEKYLKELRECRMMNFKPRARKDAAQGTEANTAKETPK--PVMTDAEIAKMLKDQFAQSRKMLDIREKYYNEFSKIL................................ | 140 |
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9. Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018. Li W, Pio F, Pawlowski K, Godzik A. Saturated BLAST: an automated multiple intermediate sequence search used to detect distant homology. Bioinformatics. 2000 Dec;16(12):1105-10. |