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Query: d1gcva_ a.1.1.2 (A:) Hemoglobin, alpha-chain {Houndshark (Mustelus griseus) [TaxId: 89020]}, from SCOP207

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst AFTACEKQTIGKIAQVLAKSPEAYGAECLARLFVTHPGSKSYFEYKDYSAAGAKVQVHGGKVIRAVVKAAEHVDDLHSHLETLALTHGKKLLVDPQNFPMLSECIIVTLATHLTEFSPDTHCAVDKLLSAICQELSSRYRLast
1 -5.910PB002794 gi|86143885|ref|ZP_01062253.1| hypothetical protein MED217_03525 [Flavobacterium sp. MED217]gi|85829592|gb|EAQ48055.1| hypothetical protein MED217_03525 [Leeuwenhoekiella blandensis MED217]  ali follow..  14  258..FQPSDSLMTETLARVEQKNFSKAKQAYRILSLKYPEKSGFF----------------ADQIRAIEKLQEN.................................................................... 313
2 -5.310PB042013 A7V626_BACUN/1-162 PB042013; Pfam-B_42013;  ali follow..  26..AEFRPAELAGIWQLCHYVSEIPDVPG-SNTFKVLSDDGRIVNFTMIPGKDAIITGYGTYQQLTDNSYKESIEKNIHLPMLDHKDNILEFEIGDDGVMYLK--YFIAKDLNGNELNTWFHETWKRV............. 151
3 -4.710HGC00915 gi|162810474|dbj|BABA01034235.1|2.0 TMP01234;  ali follow..  12  1..............................................................MSKKKRGEERMKEEDNILKKVGKKN---FKVPEGYFENLTSEVMGKLPE............................. 47
4 -4.660PB076697 gi|160881556|ref|YP_001560524.1| hypothetical protein Cphy_3432 [Clostridium phytofermentans ISDg]gi|160430222|gb|ABX43785.1| conserved hypothetical protein [Clostridium phytofermentans ISDg]  ali follow..  10  128TYPDIGVRIAHKNFTVLDKYLKSVGTKLL---YVQAPYKVNRDNNQLPYGLKDYPNKNADKLLEGLNKLKIDYIDFREVFANNFLDYPSLFFNTDHHWTTEAAFFYQYMLDYMEK......................... 240
5 -4.590HGC00150 gi|162733542|dbj|BAAZ01030454.1|1.0 TMP01074;  ali follow..  19GLSAQAARNLYA---------GKANAQVVNYLLE-SPRFLDLTYILEQYFNDTVAAGYAAQLYTTISSLTRKTVKTEAGEQAARDIAHLRTSVYQADLVTIENQFMLAVKEVKKEIGNDFAAMQSMTAEAAKRMFTEVAK 150
6 -4.150PB007740 Q89YT2_BACTN/1-193 PB007740; Pfam-B_7740;  ali follow..  40.MMQMQTNQMVRALMLDDATAAK-----FTPIYEKYLKELRECRMMNFKPRARKDAAQGTEANTAKETPKPVMTDIAKMLKDQFAQSRKMLDIREKYYNEFSKILIMKIYQQEKSNMNKFRKEFDR.............. 165
7 -4.080PB044572 Q8A533_BACTN/1-343 PB044572; Pfam-B_44572;  ali follow..  10  108EFAIHPADSVDSVWVKLAHTQEEQGTELKESFVPTDS-ISQAIHFFSDTHASYFMIIFALFVGVYLFRAFRRKQLQLVYFNDI-----------DSVYPLFLCLLMAFSATVYESMQVFVPDTWEHFY............ 227
8 -3.430HGC01024 gi|162869036|dbj|BABB01000971.1|4.0 TMP01399;  ali follow..  13  41.....DYHLSISMGNNLSYSDNYQKEAYKNYVFEKHHITEAEFD-----SSMVWYTRHTEELASLYKKLGERFRSEKKHMQELLALRENKPAVSLP............................................ 126
9 -3.360PB019278 gi|154508461|ref|ZP_02044103.1| hypothetical protein ACTODO_00960 [Actinomyces odontolyticus ATCC 17982]gi|153798095|gb|EDN80515.1| hypothetical protein ACTODO_00960 [Actinomyces odontolyticus ATCC 17982]  ali follow..  20  6..........................NFLDAMFAPYPASTRLTDAKVELRAMADAIASGMTHNEAVGRVITDFGNLQEIAPVLGIA...................................................... 70
10 -2.980HGC00593 gi|162858151|dbj|BABB01011554.1|1.0 TMP00709;  ali follow..  4.TDNNDDVLVKKFFSENRIDVPDDG--FSRRVMRRLPDRTRRI--------SRLWTAVCVVIGLLIFFRNKGFSVLVSCFDGI......................................................... 75

FFAS is supported by the NIH grant R01-GM087218-01
1 3 6 8 7 0   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Sikora S, Godzik A. Combination of multiple alignment analysis and surface mapping paves a way for a detailed pathway reconstruction--the case of VHL (von Hippel-Lindau) protein and angiogenesis regulatory pathway. Protein Sci. 2004 Mar;13(3):786-96. Epub 2004 Feb 06.