current user: public

If you have questions about the server, please let us know.

Query: d1x9fc_ a.1.1.2 (C:) Extracellular dodecameric hemoglobin (erythrocruorin), subunit III (globin C) {Common earthworm (Lumbricus terrestris) [TaxId: 6398]}, from SCOP207

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .
# Score Template Links and tools%idFirst HEHCCSEEDHRIVQKQWDILWRDTESSKIKIGFGRLLLTKLAKDIPEVNDLFKRVDIEHAEGPKFSAHALRILNGLDLAINLLDDPPALDAALDHLAHQHEVREGVQKAHFKKFGEILATGLPQVLDDYDALAWKSCLKGILTKISSRLLast
1 -4.890PB007147 Q11UU2_CYTH3/1-245 PB007147; Pfam-B_7147;  ali follow..  7.....EPGKGIVLKEYGKNIQKTIEDREQRTRYANTCVELMRQLNPGVR-----------DTEEHTTKLWDHLFIMSNFKLDVDTPYPMPDIAVLGRKPERVPYNHNKLKYKHYGKNINLLIEQAILKEDGAEKEDAIIYLGRLMKR.. 143
2 -4.730PB002794 gi|86143885|ref|ZP_01062253.1| hypothetical protein MED217_03525 [Flavobacterium sp. MED217]gi|85829592|gb|EAQ48055.1| hypothetical protein MED217_03525 [Leeuwenhoekiella blandensis MED217]  ali follow..  258.....FQPSDSLMTETLARVYVEQKNFSK----AKQAYRILSLKYPEKSGFFADQIRAIEK........................................................................................ 309
3 -4.440PB019388 gi|83589066|ref|YP_429075.1| Radical SAM [Moorella thermoacetica ATCC 39073]gi|83571980|gb|ABC18532.1| Radical SAM [Moorella thermoacetica ATCC 39073]  ali follow..  5.....................................FGYLFLDRPPY---------QVLASSAITYEEMLRLHAIEGLLKYYGNSHLADHAFAYLAATAFDGSYF--AIYEALAAWWEARGLLRRGHSQRDLFNHLASFAIH...... 99
4 -4.350PB042013 A7V626_BACUN/1-162 PB042013; Pfam-B_42013;  ali follow..  26.....AEFRPAELAGIWQLCHYVSEIPDVPGILKPSNTFKVLSDD----GRIVNFTMIPGKDAIITGYGTYQQLTDNSYKESIEKNIHLPML---DHKDNILEFEIGDDGVMYLKYFIAKDLNGN-NTWFHETWKRV............ 151
5 -3.900HGC00915 gi|162810474|dbj|BABA01034235.1|2.0 TMP01234;  ali follow..  12  1...........................................................................MSKKKRGEERMKEEDNILKKVGKKN---FKVPEGYFENLTSEVMGKLPE......................... 47
6 -3.790HGC00921 gi|162841401|dbj|BABA01003308.1|3.0 TMP01242;  ali follow..  6....LPNTDQARIRALKTAVVKGDMCDVYDLPVSLKTLGEARIFLSKFETAHSYYVHCYGEQSRNSKKHQANVKTARLYISHFIQVLNLAVIRMEIKESHKALYGLPVDNFS---------VPDLSSEASLAEWGQ............. 128
7 -3.610PB012991 Q2RHT0_MOOTA/1-175 PB012991; Pfam-B_12991;  ali follow..  15  5..........EEVRTGWSFLLRIAVVDGQGGGIGKHITARLRQELPPEVEILALGTNAAATVAMIKAGANEGATGERAIIYNAPRVEAITKFLLPINRSGVEVIGVTPEPLPHLIEALVNRVKFFYQEGGDK................. 174
8 -3.570PB076697 gi|160881556|ref|YP_001560524.1| hypothetical protein Cphy_3432 [Clostridium phytofermentans ISDg]gi|160430222|gb|ABX43785.1| conserved hypothetical protein [Clostridium phytofermentans ISDg]  ali follow..  10  129....YPDIGVRIAHKNFTVLDKYLKSVGTKL---------LYVQAPYKVNRDNNQLPYGLKDYPNKNADKLLEGLNKLKIDYID----FREVFANNFLDYPSLFFNTDHHWTTEAQYMLDYMEKNYE...................... 243
9 -3.560PB050904 Q64SA2_BACFR/1-230 PB050904; Pfam-B_50904;  ali follow..  11  101.......NDGVRIFLTLGKLGKAIQNNPQGIVASMNMNNLYIETATELVSVFTLLNDAVAKGSNEGAERSKTLWALNDQLSDFSRKLHLLYLSIRYYTFNDVWNNVTAGMLDRDNGEAA--------RMALSHWHRAAALV........ 230
10 -3.360PB007740 Q89YT2_BACTN/1-193 PB007740; Pfam-B_7740;  ali follow..  12  48....................................MVRALMLDDATAAKFTPIYEKYLKELRECRMMNFKPRARKDA-KPVMTD-AEIAKMLKDQFAQSRKMLDIREKYYNEFSKIL............................... 140

FFAS is supported by the NIH grant R01-GM087218-01
1 3 9 8 0 4   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Godzik A. Comparative analysis of protein domain organization. Genome Res. 2004 Mar;14(3):343-53.