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Query: d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}, from SCOP207

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKVEELAESISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIKGGKSLYVVPLRALAGEKYESFKKWEKIGLRIGISTGDYESRDEHLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRRMNKALRVIGLSATAPNVTEIAEWLDADYYVSDWRLast
1 -6.130PB050904 Q64SA2_BACFR/1-230 PB050904; Pfam-B_50904;  ali follow..  10  40.............................GNELINGQIEKQIKGQTQTALLQNSIATEFNQIHKWEKQ-----YNSYLKTASGYASSLKACTHLYNDGVRIFLTLGKLGKAIQNNPQGIVASMNMNNTATELVSVFTLLNDAVASNENMLTGAERSKTLWALNDQLSDFSRKLHLLYLSIRYYTFNDVWNNVTAGMLDRDNG 213
2 -2.920PB005684 gi|160884252|ref|ZP_02065255.1| hypothetical protein BACOVA_02230 [Bacteroides ovatus ATCC 8483]gi|156109991|gb|EDO11736.1| hypothetical protein BACOVA_02230 [Bacteroides ovatus ATCC 8483]  ali follow..  13  56FPENDWPEFLQRIIKAGSSPIQHDIMLLGALTALGACMSRH-CFVVAPSASGKGILSYIRLLVEPIHDE-------IRKEVTIQMKAYKKEKAEYDAMGKERTKKEAPQMPPNRMFLISNTGTGILQNIMDSDGTG----LICEAEADTL-GSDHGHWSDTLRK...................................... 227
3 -2.900HGC00789 gi|163310627|dbj|BABD01000073.1|7.0 TMP01036;  ali follow..  10  1..........................................MAVSAPDMIAKTILQQIGGKRFTAMTGSRDFIDMGNGLRMSLARNKTSANRLDIIY----------DEGADLYNMRFYRRTFSKKTFECKTKDIAVHEGIYFDMLEEMFTMVTGLYTRF......................................... 118
4 -2.850PB128892 A6TNK2_9CLOT/1-174 PB128892; Pfam-B_128892;  ali follow..  11  30...........IQLTQFIMENDIMNYFMLQ-QFIGELKESSFIMEQEKTDQGKKTLTYFI-IPEEKRLKIDHLLNIKKEEFVRNTEIKGEYEKLTDNEYLVKLSVIEQGTPIFNLKLSVGNVKQAKDMCEKWRSDAQELYGQIINLL....................................................... 173
5 -2.460HGC00311 gi|163635536|dbj|BABG01000737.1|2.0 TMP00178;  ali follow..  17  45................................................................................................................................................KRTHRL---NLGGTIESLAPEFKDLTRT-EMTELMEYIFSLPEVQRAVR......... 90
6 -2.310PB060121 Q64SA7_BACFR/1-251 PB060121; Pfam-B_60121;  ali follow..  11  1..MKKEQFEFNELPYPTLARFGLEMIEDLPLCILKEIGKGGYLPMRVTNENGEVIESRSRFFIRMDSGEVDVVFYPTLKYNEEQQKQLLDGKSIIADVAMADGR---------RSKAFVQIDEETKQVMYVPTPIIARNLKVLAEVMHLGTVEQHGEPLTV......................................... 166
7 -2.180HGC00522 gi|163636101|dbj|BABG01000172.1|3.0 TMP00580;  ali follow..  13......................FDIAKQNQEKAWQVIKNTNIIQIWEDAGAKINLVGSLRTGLLMKHRDIDFHIYSSPLNLTDSFQAMARLAENPSIKRIECANLLHTAEACIEWHAWYQNEEQMDMIHIREGSRYDGYFEKVAQRIEIMTDEIRETILRLTPETEKIIGVEYYQAVIRDGVRDYSGFKEWRKQH....... 193
8 -2.100HGC00711 gi|162743779|dbj|BAAZ01020484.1|1.0 TMP00907;  ali follow..  28................................................DERGAGTVLVVGVIAVLLAAALGVSGLIQAQAAAGRSRAAADLAALGGATALSSIVAASRVARANGAEVTTCSVTGEDVVVE........................................................................ 116
9 -2.000HGC00993 gi|163626727|dbj|BABG01009540.1|1.0 TMP01352;  ali follow..  15  3.........................................SLLLSTFAMMGLTFVIGFFVAGVIKLIASAADSLAFYSSHQEELARLKRIRKLHQKVATLITESALSDEEYGS........................................................................................ 75
10 -2.000PB003645 Q65HI2_BACLD/1-230 PB003645; Pfam-B_3645;  ali follow..  12  109............................................................ILETIIGVEDVSIVVNVDATSLKIFEKNRKTQETSTNETDKQGGKRTVSEMSSDEEIVIIKNGDKETPVVVQTKKPDIRGVLVVAQ----NVQIKKTIIEAVTRVLDVPSHRVAVAPKKM...................... 227

FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 2 1 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Jaroszewski L, Rychlewski L, Godzik A. Sensitive sequence comparison as protein function predictor. Pac Symp Biocomput. 2000;:42-53.