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Query: d3ci3a1 a.25.2.0 (A:2-188) automated matches {Lactobacillus reuteri [TaxId: 1598]}, from SCOP207

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst KIYTKNGDKGQTRIIGKQILYKNDPRVAAYGEVDELNSWVGYTKSLINSHTQVLSNELEEIQQLLFDCGHDLATPADDERHSFKFKQEQPTVWLEEKIDNYTQVVPAVKKFILPGGTQLASALHVARTITRRAERQIVQLMREEQINQDVLIFINRLSDYFFAAARYANYLEQQPDMLYRNSKDVFRLast
1 -4.090PB004996 Q5NNS6_ZYMMO/1-150 PB004996; Pfam-B_4996;  ali follow..  12  2...................................................ANLDVLFERLSRSSFRRRFRLGVQEQQANKGMETILEHGKDFIAQRL---APAEIPNDGKQTPKGHPVFLAQHATGTCCRGCIEKWHRIEAGKSLSQEEQAYILDV.............................. 107
2 -3.320PB007147 Q11UU2_CYTH3/1-245 PB007147; Pfam-B_7147;  ali follow..  12  13.VLKEYGKNIQKIVDWILTIEDREQRTRYANTCVELMRQLNPGVRDTEEHTTKLWDHLFIMSNFKLDVDTPYPMPDIAVLGRKPERVPYNHNKLK--YKHYGKNINLLIEQAIL--EDGAEKEDAIIYLGRLMKRLYSTWNKENVDDEVIVEHLSELSK............................ 167
3 -2.540PB032818 Q5LA03_BACFN/1-211 PB032818; Pfam-B_32818;  ali follow..  14  60KVATQGGKLGL-----AEKSASRKMLMQDYGISESFFKEIDTSIKKNCRTQNDVQAYLFMYQSDLMMLMGNLMQ-----------------------------------KFRMPAIFKKALRSMTEKTVHDVCTKTVWKADDVHKTAAAVRQYKERLSEYVYNIVLLAKKEPKHKD........... 206
4 -2.510PB002589 gi|91201099|emb|CAJ74158.1| hypothetical protein [Candidatus Kuenenia stuttgartiensis]  ali follow..  19NLRTDDGLRGWWNNEEGPDFKHAEFFLEGRGSV-EIHVFASDWIHHKHENQKTYDAVCLHV-----DLKGRCVKNFSGKVIPQITLSLYLEAELDEIIETIDVGSYIGNKQVIPGYCNLEMRKQLDYAGDERILQKAKKYEKWIENKPFERVLYEAIMESL.......................... 197
5 -2.430HGC00915 gi|162810474|dbj|BABA01034235.1|2.0 TMP01234;  ali follow..  13  2........................................................................................SKKKRGEERMKEILKKVGKKNSFKVPEG--------YFENLTSEVMGKLPEKEGPAFEEVKQPMMWIRMKPLLYMAAMFI................... 76
6 -2.310PB033130 gi|160880323|ref|YP_001559291.1| transglutaminase domain protein [Clostridium phytofermentans ISDg]gi|160428989|gb|ABX42552.1| transglutaminase domain protein [Clostridium phytofermentans ISDg]  ali follow..  14  23...LYTDEKGCVSITIGLRAVKDGFFAEAMGHVRT-QEEITLILNDNLLSKDWVTDSWEMC---------EVEAPKDSVKYQFNLTREQQATNRSKLREAKLLRENRIESYYDEALAENVPDLHLAKGNFMEIYRFLTVDGNNVDSNQDRLALLKTLKV............................ 177
7 -2.270PB162020 _JGI.0344610_ 2004040329 [Human Gut Community Subject 8]  ali follow..  11  7..................KVQAEQQRLEA----------VTAQVADVEQSLEKTKAAAEKQKKKLEALQKETKAARATALTVQDIEAMGKKATFGNNITLTPDECRTLKDYAVSSFAEKAEKLKYKQKYEQAEKSASVWKRRFEALNEKYLELKKKAQPYLDALEIASEKVRAFLDAVLARGKE... 162
8 -2.210PB012771 _Gut.Meta.Jp.0094636_ gi|162817068|dbj|BABA01027641.1||1 (+ 249:636~0 complete)  ali follow..  44..............................................................................................SLYERYLQEKHPHEYVRLIWADELAALLESVQRECEEREAVLVREMAEAEGVNEEM-----KGNEQMAWVQRMEMICGRVEEVVCEE...... 125
9 -2.110PB001404 Q2S5L8_SALRD/1-256 PB001404; Pfam-B_1404;  ali follow..  11  155.ISELEGKPRQVNRLAATRIMRVQRLTDVYGDVPYFDAGKGALEGEFTPHYTRQDSIYMDLHDELRAAVDQFDASQPT............................................................................................................. 234
10 -2.090PB034679 gi|150005530|ref|YP_001300274.1| hypothetical protein BVU_3014 [Bacteroides vulgatus ATCC 8482]gi|149933954|gb|ABR40652.1| conserved hypothetical protein [Bacteroides vulgatus ATCC 8482]  ali follow..  61...............NGNFVELDARFLDFFELLLEANEEINTATVLKEKIQSRKESYVRNIKITFQKLARVTIIDNAFKHEPTYQIKIAKLQNLDKKRINIQRLIDSTEHLILHEERRQATDEELTRILLELRQELQLSAHSLIRAQQDIINYLNQIKNQVILVEKIRKVKYLQDQFELRARSNLSE 258

FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 5 6 5   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Rychlewski L, Zhang B, Godzik A. Functional insights from structural predictions: analysis of the Escherichia coli genome. Protein Sci. 1999 Mar;8(3):614-24.