current user: public

If you have questions about the server, please let us know.

Query: d4i0va_ a.1.1.1 (A:) automated matches {Synechococcus sp. [TaxId: 32049]}, from SCOP207

Results of FFAS03 search in NEW_HUMAN_DOMAINS
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120
# Score Template Links and tools%idFirst ASLYEKLGGAAAVDLAVEKFYGKVLADERVNRFFVNTDMAKQKQHQKDFMTYAFGGTDRFPGRSMRAAHQDLVENAGLTDVHFDAIAENLVLTLQELNVSQDLIDEVVTIVGSVQHRNDVLNRLast
1 -5.690sp|Q5TH69|BIG3_HUMAN Brefeldin A-inhibited guanine nucleotide-exchange protein 3 OS=Homo sapiens GN=ARFGEF3 PE=1 SV=3  ali   12  33.ELVRLVGSVDSMKPVLQSLYHRVLLYPPPQHRVEAIKIMKEILGSPQRLCD-LAGPSSTESESRKRSISKRKSHLDLLKLIMDGMTEACIKG--GIEACYAAVSCVCTLLGALDE....... 144
2 -5.340sp|Q9Y2D4|EXC6B_HUMAN Exocyst complex component 6B OS=Homo sapiens GN=EXOC6B PE=1 SV=3  ali   13  15..IYSVLGARETFEN----YYRKQRRKQARLVLQPPSNMHETLDGYRKYFNQIVG----VVEDHILHTTQGLVNRAYIDE--WEMALSKTIAALRTHSSYCSDPNLVLDLKNLIVLFADTLQV 128
3 -5.220sp|Q8TAG9|EXOC6_HUMAN Exocyst complex component 6 OS=Homo sapiens GN=EXOC6 PE=1 SV=3  ali   14  13..IYSVLGDEETFEN----YYRKQRKKQARLVLQPQSNMHETVDGYRRYFTQIVG----VVEDHILHVTQGLVTRAYTDE--WNMALSKIIAVLRAHSSYCTDPDLVLELKNLTVIFADTLQG 126
4 -5.160sp|Q8WVM7|STAG1_HUMAN Cohesin subunit SA-1 OS=Homo sapiens GN=STAG1 PE=1 SV=3  ali   12  14.TLFEVVLGKSAMQSVVDDWIESYKQDR-----------DIALLDLINFFIQCSGCRGTVRIEM-------------FRNMQNAEIIRKMTEEFD............................ 84
5 -4.940sp|Q8N3U4|STAG2_HUMAN Cohesin subunit SA-2 OS=Homo sapiens GN=STAG2 PE=1 SV=3  ali   16  1.MLFEVVMGKSAMQSVVDDWIESYKHDR-----------DIALLDLINFFIQCSGCKGVVTAEMFRH........................................................ 56
6 -4.860sp|A7E2V4|K0913_HUMAN Zinc finger SWIM domain-containing protein KIAA0913 OS=Homo sapiens GN=KIAA0913 PE=1 SV=1  ali   14  47.GLAAKLG-VNYVHQFCVGAAKGVLSPFVLQEIVMETLQRLSPAHAHNHLRAPAFHQQRCQQAYMQYIHHRLIH---LTPADYDDFVNAIRSARSAFCLTPMGMMQFNDILQNLKRS...... 160
7 -4.790tr|Q5T795|Q5T795_HUMAN MDN1, midasin homolog (Yeast) (Fragment) OS=Homo sapiens GN=MDN1 PE=2 SV=1  ali   1TELYEELESKEDLQVLIVDYLKGLSVNKNIINFYT-----ALRKESGTKLVDGTGHRPHYSLRTLCRAFAASNPCGNIQRSLYEGFCLGFLTQLDRA--SHPIVQKLICQHIVPGNVKSLLKQ 123
8 -4.710sp|Q9P217|ZSWM5_HUMAN Zinc finger SWIM domain-containing protein 5 OS=Homo sapiens GN=ZSWIM5 PE=2 SV=2  ali   260.ALSHSLG-KNELAALIPLVVKSVHCATVLSDILRRCTVIPGRRSSGKLMSTDKAPLRQLLDATINAYINTTHSRLTISPRHYGEFIEFLSKARETFLLPQDGHLQFAQFIDNLKQKKKLMLL 392
9 -4.630tr|F8WCB3|F8WCB3_HUMAN Uncharacterized protein OS=Homo sapiens GN=STAG1 PE=4 SV=1  ali   12  14.TLFEVV-GKSAMQSLHVVCIHLVG---------RGERKRSSVYFLEAFGPSIYIPLMGTYHILSPWWMTGLNHINKTGTSHF........................................ 87
10 -4.520sp|Q14999|CUL7_HUMAN Cullin-7 OS=Homo sapiens GN=CUL7 PE=1 SV=2  ali   24  118AVVLNQLGARDAISKALEKHLGKLELAQELRDMV--FKCEKHAHLYRKLITNILGG................................................................... 171

FFAS is supported by the NIH grant R01-GM087218-01
1 4 5 9 0 4   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Godzik A. Functional differentiation of proteins: implications for structural genomics. Structure. 2007 Apr;15(4):405-15.