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Query: d1jfla2 c.78.2.1 (A:116-228) Aspartate racemase {Pyrococcus horikoshii OT3 [TaxId: 70601]}, from SCOP207

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst FKKAGLLATTGTIVSGVYEKEFSKYGVEIMTPTEDEQKDVMRGIYEGVKAGNLKLGRELLLKTAKILEERGAECIIAGCTEVSVVLKQDDLKVPLIDPMDVIAEVAVKVALEKLast
1 -54.1001jfl_A mol:protein length:228 ASPARTATE RACEMASE  ali model follow..  100  116FKKAGLLATTGTIVSGVYEKEFSKYGVEIMTPTEDEQKDVMRGIYEGVKAGNLKLGRELLLKTAKILEERGAECIIAGCTEVSVVLKQDDLKVPLIDPMDVIAEVAVKVALEK 228
2 -52.5002zsk_A mol:protein length:226 226aa long hypothetical aspartate racemase  ali model follow..  30  115VRKVLLLGTKTTMTADFYIKTLEEKGLEVVVPNDEEKEELNRIIFEELAFGNLKNKEWIVRLIEKYRESEGIEGVILGCTELPLAIKQGDVSVEVFDSAEIHMRKLIELASE. 226
3 -48.6003s7z_A mol:protein length:268 Putative aspartate racemase  ali model follow..  31  135.RHVGLLATNATLATGLYQKKALARGLTLIQPEDAGQALVMQAIYT-LKRGDKTAAQALLLPQIDSLIARGAQAIIMGCTEIPLIVAGHEIACPMIDSTASLVRAAIRWYESW 247
4 -48.5005ell_A mol:protein length:238 Asp/Glu_racemase family protein  ali model follow..  24  117MTRVALLGTRYTMEQDFYRGRLEQFSINCLIPEADERAKINQIIFEELCLGQFEASRAYYAQVIARLAEQGAQGVIFGCTEIGLLVPEERSVLPVFDTAAIHAEDAVAFMLSL 231
5 -47.6003ojc_A mol:protein length:231 Putative aspartate/glutamate racemase  ali model follow..  33  118IDKIGLLGTRYTMEQGFYRGRLEKHGIEVITPDDTDREAVNRIIYEELCLGIIETSRDAYRRVIKKLEAQGVQGIIFGCTEITLLVNAQDASVPVFDTTAIHASAAADYALQ. 231
6 -47.4005b19_A mol:protein length:232 Aspartate racemase  ali model follow..  20  115FKNVLLLSTNATVSSGIYTGKLRDYNINTVIPDQDIVMKSIHYVKVND-----TKMARETIEPVINGHRNEVDALLLACTEMPVIISEKTYNIPVIDSDEALAAALIKSAGKR 222
7 -43.0005wxx_A mol:protein length:260 McyF  ali model follow..  25  124.EPTLLLASTGTYQKKLFQEGCTTADLIIS-LSESDQKLIHEMIYKVLKRG--HDPLSILRDIEALLEKYNTRSYISGCTEFHLLTKSLKLSIKAIDPLSTIAQNFSQLIIKQ 236
8 -19.3003out_A mol:protein length:268 Glutamate racemase  ali model follow..  19  112.NTVGVIATPATINSNAYALQIHKKNPNIEVYSNPCGLFVSMIEEGFVSG---HIVELVAKEYLSYFHDKNIQALILGCTHYPIIKEAKILDVKLIDPSLQASKMLYSLLFEN 222
9 -18.8001zuw_A mol:protein length:272 glutamate racemase 1  ali model follow..  16  111.QHIGVIGTENTIKSNAYEEALLALNPDLKVENLACPLLVPFVESGKFLD---QTADEIVKTSLYPLKDTSIDSLILGCTHYPILKEAIQ-HVNIISSGDETAREVSTILSYK 223
10 -18.7002gzm_A mol:protein length:267 Glutamate racemase  ali model follow..  20  110.YHVGIIGTIGTVKSGAYEEALKSINNRVMVESLACPPFVELVESGNFES---EMAYEVVRETLQPLKNTDIDTLILGCTHYPILGPVIK-KVQLISSGDETAREVSTILYHS 222
11 -18.6002jfq_A mol:protein length:286 GLUTAMATE RACEMASE  ali model follow..  16  123.QNVLVLGTEGTIKSEAYRTHIKRINPHVEVHGVACPGFVP--LVEQMRYSDPTITSIVIHQTLKRWRNSESDTVILGCTHYPLLYKPIY-KKTVISSGLETAREVSALLTFS 236
12 -18.5003hfr_A mol:protein length:269 Glutamate racemase  ali model follow..  16  112.NKIGVLGTLGTVESMAYPTALKGLNRRVEVDSLACPKFVSVVESGEYKS---AIAKKVVAESLLPLKSTKIDTVILGCTHYPLLKPIIE-GVAVINSGEETASEVSALLDYH 224
13 -18.3002dwu_A mol:protein length:276 Glutamate racemase  ali model follow..  16  114.GKIGVIGTVGTIQSNMYEKALHELDTYLKVHSHACPTLATVVENRLEDT---AYVTQQVKQALLPLTKEDIDTLILGCTHYPLLESYIK-DVTIISSAEETAIELSTILQHK 226
14 -18.3002jfo_A mol:protein length:293 GLUTAMATE RACEMASE  ali model follow..  20  125.NKIGVIGTLGTIKSASYEIAIKSKAPAIEVTSLACPKFVPIVESNQYRS---SVAKKIVAETLQALQLKGLDTLILGCTHYPLLRPVIQ-HVTLIDSGAETVGEVSMLLDYF 237
15 -18.2002jfu_A mol:protein length:291 GLUTAMATE RACEMASE  ali model follow..  19  126.KQVGIIGTIGTVKSQAYEKALKEKVPELTVTSLACPKFVSVVESNEYHS---SVAKKIVAETLAPLTTKKIDTLILGCTHYPLLRPIIQ-NVQLIDSGAETVGEVSMLLDYF 238
16 -17.8005hj7_A mol:protein length:273 Glutamate racemase  ali model follow..  18  114.GRIGVIGTRATITSHAYQDAFAA------ARDTEITAVACPRFVDFVERGVTSQVLGLAQGYLEPLQRAEVDTLVLGCTHYPLLSGLIQLNVTLVSSAEETAKEVVRVLTEI 225
17 -17.7001b73_A mol:protein length:254 GLUTAMATE RACEMASE  ali model follow..  13  107.KKIGVIGTPATVKSGAYQRKLEEGGADVFAKACPLFAPLAE------EGLLEGEITRKVVEHYLKEFKGKIDTLILGCTHYPLLIKKFLGDAEVVDSSEALSLSLHNFIKDD 215
18 -16.9005ijw_A mol:protein length:279 Glutamate racemase  ali model follow..  18  115.GRIGVIGTQATIASGAYQDAFAA------ARDTEVFTVACPRFVDFVERGVTRQVLGLAEGYLEPLQLAEVDTLVLGCTHYPMLSGLIQLNVTLVSSAEETAKDLLRVLTEL 226
19 -16.2002oho_A mol:protein length:273 Glutamate Racemase  ali model follow..  15  119.GQVGVIGTPMTVASDIYRKKIQLLAPSIQVRSLACPKFVPIVESNEMCS---SIAKKIVYDSLAPLVG-KIDTLVLGCTHYPLLRPIIQ-SVKLIDSGAECVRDISVLLNYF 230
20 -15.8002jfn_A mol:protein length:285 GLUTAMATE RACEMASE  ali model follow..  16  128.GIVGLLATRGTVKRSYTHELIARFANECQIEMLGSAEMVELA---EAKLHGEDVSLDALKRILRPWMKEPPDTVVLGCTHFPLLQEELLQGTRLVDSGAAIARRTAWLLEHE 242
21 -15.0005w16_A mol:protein length:278 Glutamate racemase  ali model follow..  17  124.RKVGLIGTQATVESGAYPRYVDLA-VPLVEEGLWDDPVALLVARHYLED-----------------APKDLEALILGCTHYPFLIGAVLPGVALLDSAELTAQEVARALEAE 228
22 -15.0003uhf_A mol:protein length:274 Glutamate racemase  ali model follow..  18  127.KEILVIATKATIKSEEYQKRLLSQ------GYTNINALATGLFVPMVEEGIFEGDFLQSAMEYYFKNITTPDALILACTHFPLLGRSLS-KTKLIHSGDAIVEFLKE..... 231
23 -14.8002jfx_A mol:protein length:255 GLUTAMATE RACEMASE  ali model follow..  18  109.APILVLGTKATIQSNAYDNALKQQ------GYLNISHLATSLFVPLIEESILEGLETCMHYYFTPL-EILPEVIILGCTHFPLIAQKIETPPLLIHSGDAIVEYLQQ..... 220
24 -14.4005w1q_A mol:protein length:275 Glutamate racemase  ali model follow..  17  123.APILVLGTKATIQSNAYDNALKQQ------GYLNVSHLATSLFVPLIEENILEGLETCMRYYFTPL-EILPEVVILGCTHFPLIAQKIE-PPLLIHSGDAIVEYLQQ..... 234
25 -13.9002eq5_A mol:protein length:228 228aa long hypothetical hydantoin racemase  ali model follow..  23  92VRKLLSIPVIGAGSSVSALALAYGRRVGVLNLTEETPKVIRSILGNN-LDLLTDWGRREVINAAKRLKEKGVEVIALGCTGMSTI--EEEVGIPVIDPVIASGAVALHAL... 217
26 -11.2003qvj_A mol:protein length:245 Putative hydantoin racemase  ali model follow..  13  86ARELAQGPVIGIAEAAMHMATMVATRFSIVTTLPRTLIIARHLLHQALEDGSGLAQEKVRERCIRALKEDGSGAIVLGCGGMATLAQTRELRVPVIDGVSAAVKMVESLV... 215
27 -11.1005lfd_A mol:protein length:242 Allantoin racemase  ali model follow..  13  108.HAYSVV-TTLDRTVPLIEDRLKLAGLY----QRCASVRASGMAVLELEEDPVAAMEAIVRQAELAIREDKAEVICLGCGGMAGLDERQRTGVPVVDGVTAAVTIAESLV... 213
28 -9.8102dgd_A mol:protein length:223 223aa long hypothetical arylmalonate decarboxylase  ali model follow..  12  108VRKLWIGTPYIKERTLEEVEWWRNKGFEIVGYDGLGKIRGIDI---------SNTPIFTIYRLVKRHLNEKADAVYIACTALSTY--HEDLDMPVVSENAAAMWEALNKL... 214
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Igarashi Y, Eroshkin A, Gramatikova S, Gramatikoff K, Zhang Y, Smith JW,Osterman AL, Godzik A. CutDB: a proteolytic event database. Nucleic Acids Res. 2007 Jan;35(Database issue):D546-9. Epub 2006 Nov 16.