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Query: d1b0ba_ a.1.1.2 (A:) Hemoglobin I {Clam (Lucina pectinata) [TaxId: 244486]}, from SCOP207

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140
# Score Template Links and tools%idFirst SLSAAQKDNVKSSWAKASAAWGTAGPEFFMALFDAHDDVFAKFSGLFSGAAKGTVKNTPEMAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAANHKARGISAGQLEAAFKVLAGFMKSYGGDEGAWTAVAGALMGMIRPDMLast
1 -41.400PF00042.22; GLB8_CHITH/9-115; Globin  ali follow..  28  1.....QLALFKSSWNTVKHN----EVDILYAVFKANPDIQAKFPQ-FAGKDLDSIKDSADFAVHSGRIVGFFSEVIGLIGNPEALKTLIDGLASSHKARGIEKAQFEEFRASLV............................ 107
2 -13.500PF11563.8; F0XJU9_GROCL/20-199; Protoglobin  ali follow..  11  13DFSSTDIDHLVAGAKYIKVLIPAVTNIVYRKLLQ-YDITARAFETRSTSFEGPLDAVPAEDSPQILHRKMFLRAYLARLCS-MTFWEYLDKVGMMHVGLGRAHPLHSLIQDVLTEAVLSHPRLSKALGKVIWIQNDLFAK.. 172
3 -8.510PF08897.11; D5WYH9_THIK1/5-137; Domain of unknown function (DUF1841 topsan)  ali follow..  12  2..KDEVRQFFLSAWQRHRAGGVLTPLEIAADWMELHPEYHAELTDPQSANRDYAVEQGRTNPFLHLSMHLTIAEQVSI-DQPPGIRQAFELLRSKRGEHEAHHAIMECLGEMLWTAQRSGLPDGAAYVDCVQ.......... 132
4 -7.520PF00502.19; APCD_SYNP2/6-160; Phycobilisome protein  ali follow..  12  13.PSSGELSGIKRIAEALADNEKKIVDQAQKQLFSIHPEYRTSGGNAATTKQYNQCLRDYGW------YLRLVTYGI--AGDKDPIERGLIGVKEMYNALGVPVPGMVDAIRCLKDAALGVLDSEEA--RIAAPYFDFITQAM 155
5 -6.690PF06021.11; F7BVP0_HORSE/2-206; Aralkyl acyl-CoA:amino acid N-acyltransferase  ali follow..  14  171SLDVTHAALVNKFWH----GGNERSQRFIERCIRNFPN........................................................................................................ 205
6 -6.680PF06744.12; Q88IA8_PSEPK/1017-1212; Type VI secretion protein IcmF C-terminal  ali follow..  30QIAKPWEQVMAHRYPIAGSSRNEASVKDLQRFVDPDSGLLPAFKRNEIGNLAGGEGLGVGDGKGPALV----PGMLNSIDKASSVGQVIASLSDRDNGFEIMLEPSANFTDIVFTLDGQEQHYRNGW............... 161
7 -6.580PF01152.21; Q7CX73_AGRFC/7-127; Bacterial-like globin  ali follow..  19............................FYELMDTLPEAARCRA-----------IHPADLSGSEAKFYDYLTGYLGGPPVYVE-----PMLRRRHFVAPIGPAERDEWLLCFRRAMDETIENAKLREIIWAPVERL..... 115
8 -6.550PF04876.12; NCP_RSVT/5-177; Tenuivirus major non-capsid protein  ali follow..  41RVTEDTKKLILKGCVYIAYHHPLETDTLFIKVHKHIPEFCHSF--------LSHLLGGEDDDNALIDIGLFFNMLQPSLGGKDQIKMLLDQIIKMAKAESSDTEEYEKVWKKMPTYFESIIQP................... 169
9 -6.390PF08362.11; RUTR_ECOLI/70-212; YcdC-like protein, C-terminal region  ali follow..  1.........LRQILDIWLAPLKAFRIRLKLEVSRDYPQASRLFCM-------EMLAGAPLLMDELTGDLKALIDEKSALIAGWVKSGKLAPIDPQHLIFMISTQHYADFAPQVEAVTGATLRDEVFFNQTVENVQRIIIEGI 140
10 -6.300PF11817.8; A6QX66_AJECN/229-501; Foie gras liver health family 1  ali follow..  176..............................................................AHSKLILGFLESSTEEFSKRQQ-NRIVEQLRLKMAKEHIRIGQWKDGLALIQPLWLQLSWRREGWWGLMEDFAWTLRE.. 252

FFAS is supported by the NIH grant R01-GM087218-01
1 3 6 8 0 9   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Grynberg M, Jaroszewski L, Godzik A. Domain analysis of the tubulin cofactor system: a model for tubulin folding and dimerization. BMC Bioinformatics. 2003 Oct 10;4(1):46.