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Query: d1cg5b_ a.1.1.2 (B:) Hemoglobin, beta-chain {Cartilaginous fish akaei (Dasyatis akajei) [TaxId: 31902]}, from SCOP207

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140
# Score Template Links and tools%idFirst VKLSEDQEHYIKGVWKDVDHKQITAKALERVFVVYPWTTRLFSKLQGLFSANDIGVQQHADKVQRALGEAIDDLKKVEINFQNLSGKHQEIGVDTQNFKLLGQTFMVELALHYKKTFRPKEHAAAYKFFRLVAEALSSNYHLast
1 -35.300PF00042.22; GLB8_CHITH/9-115; Globin  ali follow..  18  1......QLALFKSSWNTVKHN--EVDILYAVFKANPDIQAKFPQFAGKDLDSSADFAVHSGRIVGFFSEVIGLIGNLKTLIDGLASSHKARGIEKAQFEEFRASLV................................... 107
2 -13.300PF11563.8; F0XJU9_GROCL/20-199; Protoglobin  ali follow..  11  12LDFSSTDIDHLVAGAKYIKVPAVTNIVYRKLLQ-YDITARAFETRSTSFEGPLDAVPAEDSPQILHRKMFLRA-MTFWEYLDKVGMMHVGLGRAHPLHSLIQDVLTEAVLSHPRLS-KMGLVKALGKVIWIQNDLFAKWY. 174
3 -10.100PF01152.21; Q7CX73_AGRFC/7-127; Bacterial-like globin  ali follow..  1............TLYEAIGGDATVRALTRRFYETLPEAARCRAIHPADLSGSEAKFYDYLTGYLGGPPVYVEKHGH-----PMLRRRHFVAPIGPAERDEWLLCFRRAMDET---IENAKLREIIWAPVERLAFHMQN... 121
4 -8.830PF11075.8; Q089B5_SHEFN/10-184; Protein of unknown function VcgC/VcgE (DUF2780 topsan)  ali follow..  13  60LGLSQTQAEGGLGSLLSLAQTNLGENDFSQLSDSIPNADGLLAAVPALSSDSGMSG---LLSQAGNLGSALQGSAMVYDAFEKLG-------ISKEYITPMVDIAKNYLQQSGGDGTVDLLMKG................. 173
5 -7.550PF11650.8; C4K6U9_HAMD5/1-159; P22 tail accessory factor  ali follow..  1MTKPLTKGEIVLFALRKAGIASEATNI-------------------DVEPQSFEEGINDLEDLMAELQITFGDLGYQFSAEEENPTADDASGLPRKYKQVMGYQLMLRMLSDYGIEPTPRQEASAAAAYDALLTDTLS... 119
6 -7.100PF05427.11; C3ZZT8_BRAFL/2-368; Acidic fibroblast growth factor binding (FIBP)  ali follow..  10  229VEMDRVFLQELRDLKVLTGEKDVYEKHKGLV------CSALRGKIPDPTYADIESNFKNLSRCIVSVASGLIHSKELKDFFVDLVEK-RNARWSKRDVEAFLKAYEAAIQQIPQLKRCPHLLTVWTRYMTTLKKCILQLYH 367
7 -6.920PF08897.11; D5WYH9_THIK1/5-137; Domain of unknown function (DUF1841 topsan)  ali follow..  2...KDEVRQFFLSAWQRHRAGG--ELIAADWMELHPEYHAELTDPQSANRDYAVEQGRTNPFLHLSMHLTIAEPPGIRQAFELLRSKRGEHEAHHAIMECLGEMLWTAQRS.............................. 118
8 -6.680PF05194.12; UREE_RHOFT/78-166; UreE urease accessory protein, C-terminal domain  ali follow..  13.......................................................................GTAFDLTRAAYHLGNRHVPIELKPDHLKIEPDHVLADMLRAMHLTVLAVNE................... 63
9 -6.530PF06021.11; F7BVP0_HORSE/2-206; Aralkyl acyl-CoA:amino acid N-acyltransferase  ali follow..  14  171.SLDVTHAALVNKFWH--GGNERSQRFIERCIRNFPN........................................................................................................ 205
10 -6.210PF00502.19; APCD_SYNP2/6-160; Phycobilisome protein  ali follow..  10  13..PSSGELSGIKNFLAT-NEKKIVDQAQKQLFSIHPEYRTSGGNAATTKQYNQCLRDYGWYLRLVTYGILAGDKDPIERGLIGVKEMYNALGVPVPGMVDAIRCLKDAALGVLDSEEARIAAPYFDFITQAM......... 155

FFAS is supported by the NIH grant R01-GM087218-01
1 3 6 8 0 9   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Grynberg M, Jaroszewski L, Godzik A. Domain analysis of the tubulin cofactor system: a model for tubulin folding and dimerization. BMC Bioinformatics. 2003 Oct 10;4(1):46.