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current user: public |
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| Query: d1itha_ a.1.1.2 (A:) Hemoglobin {Innkeeper worm (Urechis caupo) [TaxId: 6431]}, from SCOP207 |
| . 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 . 140 | |||||||
| # | Score | Template | Links and tools | %id | First | GLTAAQIKAIQDHWFLNIKGCLQAAADSIFFKYLTAYPGDLAFFHKFSSVPLYGLRSNPAYKAQTLTVINYLDKVVDALGGNAGALMKAKVPSHDAMGITPKHFGQLLKLVGGVFQEEFSADPTTVAAWGDAAGVLVAAMK | Last |
| 1 | -41.900 | PF00042.22; GLB8_CHITH/9-115; Globin | ali follow.. | 16 | 1 | .....QLALFKSSWNTV-----KHNEVDILYAVFKANPDIQAKFPQFAGKDLDSIKDSADFAVHSGRIVGFFSEVIGLIGNPLKTLIDGLASSHKARGIEKAQFEEFRASLV............................. | 107 |
| 2 | -12.500 | PF11563.8; F0XJU9_GROCL/20-199; Protoglobin | ali follow.. | 10 | 13 | DFSSTDIDHLVAG-AKYIKVLIPAVTNIVYRKLLQ-YDITARAFTSFEGPLDAVPAEDSPQILHRKMFLRAARLCSDPSQMTFWEYLDKVGMMHVGLGRAHPLHSLIQDVLTEAVLSHPRLSMGRKMGLVKALGKVI.... | 163 |
| 3 | -9.350 | PF08897.11; D5WYH9_THIK1/5-137; Domain of unknown function (DUF1841 topsan) | ali follow.. | 7 | 2 | ..KDEVRQFFLSAWQRHRAGGVLTPLELIAADWMELHPEYHAELTDPQSANRDYAVEQGRTNPFLHLSMHLTEQVSIDQPPGIRQAFELLRSKRGEHEAHHAIMECLGEMLWTAQRSGLPPDGA................. | 125 |
| 4 | -8.250 | PF01152.21; Q7CX73_AGRFC/7-127; Bacterial-like globin | ali follow.. | 10 | 1 | ...........TLYEAIGGDATVRALTRRFYELMDTLPEAARCRA----------IHPADLSGSEAKFYDYLTGYLGGPPVYVEKH-PMLRRRHFVAPIGPAERDEWLLCFRRAMDE-TIENAKLREIIWAPVERLAFHM. | 119 |
| 5 | -7.430 | PF05044.12; PROX1_CHICK/578-731; Homeo-prospero domain | ali follow.. | 13 | 1 | GLSPNHLKKAKLMF------------------FYTRYPSSNMLKTYFSDVKFNRCITSQQMEKYARQAINDGVTSTEELSITRDCELYRALNMHYNKA-VPERFLEVAQITLREFFNAIIAGKDVDPSWKKAIYKVICKLD | 140 |
| 6 | -7.380 | PF03305.13; Y364_MYCPN/147-325; Mycoplasma MG185/MG260 protein | ali follow.. | 9 | 3 | .......EAIKKTWGDYQKVENGLKGYTFKASVFENWHELLDFSARIARSFTNIHTKETKKGTDIQGVLG-----IDSTPNALFTSVFAAGGGNYDNFFYKVQDGRAD--------SNFKNKETSYQNLQKVFSDYKELID | 124 |
| 7 | -6.890 | PF05823.12; Q9XUB7_CAEEL/32-181; Nematode fatty acid retinoid binding protein (Gp-FAR-1) | ali follow.. | 13 | 17 | SITTEEKAAIKE----------------FIKSVMGGNKSVEELSADIK-------ERSPSLYAKVEKLDVLLRTKLAKLDPAALALFGKVIAQGLSF--YQPTPEMVKKLFKGYIAEYKTLSENAKATITDEFPIVVEFFQ | 139 |
| 8 | -6.810 | PF06021.11; F7BVP0_HORSE/2-206; Aralkyl acyl-CoA:amino acid N-acyltransferase | ali follow.. | 8 | 172 | .LDVTHAALVNKFWH-----GGNERSQRFIERCIRNFPN...................................................................................................... | 205 |
| 9 | -6.400 | PF17784.1; G9N3W9_HYPVG/16-220; Sulfotransferase domain | ali follow.. | 10 | 53 | ..VLQLLKELTEGFVVTSD------FFSFVPELCELYPDAQVVYVKRDPKTWWRSMGAVASNAQTKFLSMLFWPVPGWRWSIGTATLAFFRTQRVYTDNDLESMERHMQSVIDSVPKDRLHIVRLEDGWAPLCKILDCPI. | 186 |
| 10 | -6.280 | PF10421.9; G3WUE5_SARHA/161-351; 2`-5`-oligoadenylate synthetase 1, domain 2, C-terminus | ali follow.. | 11 | 40 | ....KNLILLVKHWYLLVTETHQKLPPVYALELLTIYEGFRTVLGLIQKYQELCIYWEVNYSFEDEIVGPFLRNQLKKPRNYRPVILDPADPTWDVGRRNGGCWHLWRLGKLEGRSWGEFQNSSQSPPWD........... | 187 |
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9. Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018. Grynberg M, Jaroszewski L, Godzik A. Domain analysis of the tubulin cofactor system: a model for tubulin folding and dimerization. BMC Bioinformatics. 2003 Oct 10;4(1):46. |