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current user: public |
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| Query: d2bkma_ a.1.1.1 (A:) automated matches {Geobacillus stearothermophilus [TaxId: 1422]}, from SCOP207 |
| . 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . | |||||||
| # | Score | Template | Links and tools | %id | First | EQWQTLYEAIGGEETVAKLVEAFYRRVAAHPDLRPIFPDDLTETAHKQKQFLTQYLGGPPLYTAEHGHPMLRARHLRFEITPKRAEAWLACMRAAMDEIGLSGPAREQFYHRLVLTAHHMVNTPDHLD | Last |
| 1 | -63.700 | PF01152.21; Q7CX73_AGRFC/7-127; Bacterial-like globin | ali follow.. | 43 | 1 | ....TLYEAIGGDATVRALTRRFYELMDTLPEAARCRAADLSGSEAKFYDYLTGYLGGPPVYVEKHGHPMLRRRHFVAPIGPAERDEWLLCFRRAMDETIENAKLREIIWAPVERLAFHMQN...... | 121 |
| 2 | -10.300 | PF11563.8; F0XJU9_GROCL/20-199; Protoglobin | ali follow.. | 12 | 30 | ............KVLIPAVTNIVYRKLLQYDITARAFSPQILHRKMFLRAYLARLCSDPSQMTFWEYLDKVGMMHVGLGRAHPHIGATLSLIQDVLTEARLSMGRKMGLVKALGKV............ | 162 |
| 3 | -7.330 | PF02211.15; Q2K6I5_RHIEC/1-218; Nitrile hydratase beta subunit | ali follow.. | 10 | 7 | .........LGGQMGFGPVAPEKDEPCFHADWEKRALG-------------ITLSCGAFGAWTIDESRHARENIPPADYLAASYYEIWIRGVETLLARHGF---TREELLSGHKLQDGAAPKRVLKAE | 110 |
| 4 | -6.520 | PF03981.12; Q7QJX5_ANOGA/117-262; Ubiquinol-cytochrome C chaperone | ali follow.. | 12 | 38 | ...........GRFMRNCIVETMWNDV--TTRAKQLTMDNPSAVRPQIQQLSEQFQAALISYDE--------------GISYDDKALAAALWRRFLGGRCDDYEKLELLVGYVRKQVSMLDQLSRYD. | 137 |
| 5 | -6.170 | PF02444.16; ORF3_HEVCH/1-114; Hepatitis E virus ORF-2 (Putative capsid protein) | ali follow.. | 16 | 26 | RPVSRLAAAVGGAAAVPAVVSGVTGLILSPSQSPIFIQPTPSPPMSPLRPGLDLVFANPPDHSAPLGVTRPSAPPLPHVVD............................................... | 106 |
| 6 | -6.140 | PF05861.12; Q882R4_PSESM/1-352; Bacterial phosphonate metabolism protein (PhnI) | ali follow.. | 12 | 1 | .....MYVAVGGEQAIDNAHRLLANKRRGDTDIAEL---DVEQIRQQLPLAVARVMSEGSLYDPQLAALAIKQSA-----DLVEAIFLLRAYRTTLTRFCASVPIDTSNMQLDRRLSATFKDVPGGQ. | 116 |
| 7 | -5.940 | PF14381.6; K4BU86_SOLLC/288-498; Ethylene-responsive protein kinase Le-CTR1 | ali follow.. | 10 | 3 | QTVSYRLWVSGSLSYADKISDGFYNILGMNPYLWVMCNATEDGKQIPSLMALKG--------------IEPSETSMEVVLIDRRGDSMLRELEDKAQEIYFAAENTLVLAENLGKLVAVYMGGSFPVE | 116 |
| 8 | -5.890 | PF11251.8; C7PJT1_CHIPD/18-247; Protein of unknown function (DUF3050 topsan) | ali follow.. | 11 | 3 | ..QHPLYPEMQRMDDIRAFMQYHVFAVWDFMSLLKSLQRNLTATRFLINEIVTGEESDVAPDGTRLSHFELLQAMEQVGADTSGIKECLQQLERGKSLTAVINGLPPAVRGFVKHTFDLIANEP.... | 137 |
| 9 | -5.750 | PF14028.6; C7QBX6_CATAD/12-341; Lantibiotic biosynthesis dehydratase C-term | ali follow.. | 15 | 6 | .....VFYASSTRPLLTECVRPMVDGLVADGLVSGYF-------------FINYWLEGP---------------HLRLRLSMAAVDPVRRRASAAIEDFLRTRPALFEVKDGFFGELYATLFELEYTP | 103 |
| 10 | -5.690 | PF17928.1; A0A117RCQ2_9ACTN/93-205; Tetracyclin repressor-like, C-terminal domain | ali follow.. | 14 | 4 | ............EEAVGSAVDRFMAFNTEHPVFFALMPGRIADAHDQLHTTLIGRIEDLLASLLPRSSPADITRTAHVCLGVYKAGLELVLAHEGAERTAYVQEVKNVLTRYLQPLA........... | 113 |
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9. Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018. Grynberg M, Jaroszewski L, Godzik A. Domain analysis of the tubulin cofactor system: a model for tubulin folding and dimerization. BMC Bioinformatics. 2003 Oct 10;4(1):46. |