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current user: public |
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Query: d2dc3a_ a.1.1.2 (A:) Cytoglobin {Human (Homo sapiens) [TaxId: 9606]}, from SCOP207 |
. 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 . 140 . 150 . 160 . 170 | |||||||
# | Score | Template | Links and tools | %id | First | EELSEAERKAVQAMWARLYANCEDVGVAILVRFFVNFPSAKQYFSQFKHMEDPLEMERSPQLRKHACRVMGALNTVVENLHDPDKVSSVLALVGKAHALKHKVEPVYFKILSGVILEVVAEEFASDFPPETQRAWAKLRGLIYSHVTAAYKEVGWVQQVPNATTPPATLPSS | Last |
1 | -37.100 | PF00042.22; GLB8_CHITH/9-115; Globin | ali follow.. | 17 | 1 | ......QLALFKSSWNTVKHN----EVDILYAVFKANPDIQAKFPQFAGKDL-DSIKDSADFAVHSGRIVGFFSEVIGLIGNPENLKTLIDGLASSHK-ARGIEKAQFEEFRASLV........................................................ | 107 |
2 | -13.300 | PF11563.8; F0XJU9_GROCL/20-199; Protoglobin | ali follow.. | 13 | 13 | .DFSSTDIDHLVAGAKYIKVLIPAVTNIVYRKLLQ-YDITARAFETRSTSFEGPLDAVPAEDSPQILHRKMFLRAYLARLCS-MTFWEYLDKVGMMHVGPLHVEYIHIGATLSLIQDVLTEAVLSHPRLSMGRALGKVIWIQNDLFAKWYVRDGEE................ | 180 |
3 | -7.490 | PF00502.19; APCD_SYNP2/6-160; Phycobilisome protein | ali follow.. | 8 | 11 | RYPSSGELSGIKRIAEALADNEKKIVDQAQKQLFSIHPEYRTSGGNAATTKQYNQCLRDYGW------YLRLVTYGI--AGDKDPIERIGLIGVKEMYNALGVPVPGMVDAIRCLKDAALGVLDSEEARIAAPYFDFITQAM.............................. | 155 |
4 | -7.100 | PF11075.8; Q089B5_SHEFN/10-184; Protein of unknown function VcgC/VcgE (DUF2780 topsan) | ali follow.. | 8 | 58 | SQLGLSQTQAEGGLGSLLSLAQTNLGENDFSQLSDSIPNADGLLAAVPALSSDSG----------MSGLLSQAGNLGSALQGSAMVYDAFEKLG--------ISKEYITPMVDIAKNYLQQSGGDGTVDLLMKG...................................... | 173 |
5 | -7.090 | PF11266.8; Q8DJB4_THEEB/11-228; Long-chain fatty aldehyde decarbonylase | ali follow.. | 8 | 1 | DYHSDRYKDAYSRINAIVI-EGEQEAHDNYIDLAKLLPQHQEELMEARHKKGFEACGRNLSVTPDMEFAKAFFEKLRANFQRALAEGKTATCLLIQALIIESFAIAAYNIYIPMADPFARKITESVVKDEYSHL...................................... | 138 |
6 | -7.020 | PF08897.11; D5WYH9_THIK1/5-137; Domain of unknown function (DUF1841 topsan) | ali follow.. | 12 | 2 | ...KDEVRQFFLSAWQRHRAGGVLTPLEIAADWMELHPEYHAELTDPQSANRDYAVEQGRTNPFLHLSMHLTIAEQVSI-DQPPGIRQAFELLRSKRG-----EHEAHHAIMECLGEMLWTAQRSGLPPD-GAAYVDCVQ................................ | 132 |
7 | -6.560 | PF08064.13; ATR_CANGA/887-989; UME (NUC010) domain | ali follow.. | 7 | 2 | .............................................................LQDNILGIFQVFSSDMHDVEGKTTYYEKLRVINGISFLVKHASNKCIISALAQLSICLQSGLEPEVRYLSMRCWFLLIQRL.............................. | 83 |
8 | -6.190 | PF17544.2; H8K302_RICAG/57-431; Family of unknown function (DUF5460 topsan) | ali follow.. | 11 | 206 | .....KGRNIKNENLDLEMQNKELAFVELLHKNFKNNAVILDEVIKINNLHDIIKLAKSIKEYEFSILPLTNLNNEIVKLNSPSAIAINFDSLSGLHEICKSLGGDDSFKTISNFARLITIIRTANPKSEE---YKESITEIFEIFNPRYTDIDYQNCEMPLLADVSSLYDS | 370 |
9 | -6.170 | PF06021.11; F7BVP0_HORSE/2-206; Aralkyl acyl-CoA:amino acid N-acyltransferase | ali follow.. | 19 | 170 | SSLDVTHAALVNKFWH----GGNERSQRFIERCIRNFPN..................................................................................................................................... | 205 |
10 | -5.930 | PF08939.10; A0A0D2XVW8_FUSO4/23-278; Domain of unknown function (DUF1917 topsan) | ali follow.. | 11 | 139 | RDIRKEIKKASDDILHLAHAAKVRAGKWM---LFCTPAEVNDVWEIVAKATAKNELGIAAKVAPRPAD--RLICVYTTDFADKADVGRVLQKLRELRLVEARGRPIYYK............................................................... | 248 |
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9. Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018. Li W, Pio F, Pawlowski K, Godzik A. Saturated BLAST: an automated multiple intermediate sequence search used to detect distant homology. Bioinformatics. 2000 Dec;16(12):1105-10. |